RNA–Protein interactions for RNA: ENST00000515261.1

PDLIM3-211, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 622 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-211ENST00000515261 C10orf95Q9H7T3 257 aa5.34□□□□□ -1.55
PDLIM3-211ENST00000515261 SEC61GP60059 68 aa5.33□□□□□ -1.56
PDLIM3-211ENST00000515261 SERP1Q9Y6X1 66 aa5.33□□□□□ -1.56
PDLIM3-211ENST00000515261 KRTAP12-1P59990 96 aa5.31□□□□□ -1.56
PDLIM3-211ENST00000515261 SPRR5A0A1B0GTR4 108 aa5.3□□□□□ -1.56
PDLIM3-211ENST00000515261 COA5Q86WW8 74 aa5.3□□□□□ -1.56
PDLIM3-211ENST00000515261 H7BZZ5 65 aa5.29□□□□□ -1.56
PDLIM3-211ENST00000515261 KRTAP20-2Q3LI61 65 aa5.29□□□□□ -1.56
PDLIM3-211ENST00000515261 LCE3AQ5TA76 89 aa5.29□□□□□ -1.56
PDLIM3-211ENST00000515261 ANAPC13Q9BS18 74 aa5.29□□□□□ -1.56
PDLIM3-211ENST00000515261 A0A1B0GU33 70 aa5.25□□□□□ -1.57
PDLIM3-211ENST00000515261 TNP1P09430 55 aa5.21□□□□□ -1.58
PDLIM3-211ENST00000515261 CCDC179H3BU77 68 aa5.18□□□□□ -1.58
PDLIM3-211ENST00000515261 KRTAP12-4P60329 112 aa5.16□□□□□ -1.58
PDLIM3-211ENST00000515261 KRTAP5-5Q701N2 237 aaPredicted RBP5.15□□□□□ -1.59
PDLIM3-211ENST00000515261 KRTAP4-2Q9BYR5 136 aa5.13□□□□□ -1.59
PDLIM3-211ENST00000515261 SMIM26A0A096LP01 95 aa5.12□□□□□ -1.59
PDLIM3-211ENST00000515261 KRTAP12-3P60328 96 aa5.1□□□□□ -1.59
PDLIM3-211ENST00000515261 ATP5EP56381 51 aaPredicted RBP5.08□□□□□ -1.6
PDLIM3-211ENST00000515261 SYNE1Q8NF91 8797 aaKnown RBP5.08□□□□□ -1.6
PDLIM3-211ENST00000515261 A8MU10 97 aa5.06□□□□□ -1.6
PDLIM3-211ENST00000515261 A0A1B0GU69 56 aa5.03□□□□□ -1.6
PDLIM3-211ENST00000515261 TMEM258P61165 79 aa4.99□□□□□ -1.61
PDLIM3-211ENST00000515261 KRTAP4-11Q9BYQ6 195 aa4.96□□□□□ -1.62
PDLIM3-211ENST00000515261 PRR15LQ9BU68 103 aa4.94□□□□□ -1.62
PDLIM3-211ENST00000515261 LINC01558Q9Y6Z2 57 aa4.91□□□□□ -1.62
PDLIM3-211ENST00000515261 KRTAP5-2Q701N4 177 aa4.79□□□□□ -1.64
PDLIM3-211ENST00000515261 UQCR11O14957 56 aa4.77□□□□□ -1.65
PDLIM3-211ENST00000515261 KRTAP5-8O75690 187 aa4.77□□□□□ -1.65
PDLIM3-211ENST00000515261 MUC5ACP98088 5654 aa4.75□□□□□ -1.65
PDLIM3-211ENST00000515261 AHNAKQ09666 5890 aaKnown RBP4.74□□□□□ -1.65
PDLIM3-211ENST00000515261 MUC5BQ9HC84 5762 aaPredicted RBP4.71□□□□□ -1.66
PDLIM3-211ENST00000515261 V9GYY9 64 aa4.71□□□□□ -1.66
PDLIM3-211ENST00000515261 KRTAP23-1A1A580 65 aa4.7□□□□□ -1.66
PDLIM3-211ENST00000515261 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
PDLIM3-211ENST00000515261 MT1AP04731 61 aa4.68□□□□□ -1.66
PDLIM3-211ENST00000515261 Q1T7F1 81 aa4.68□□□□□ -1.66
PDLIM3-211ENST00000515261 KRTAP25-1Q3LHN0 102 aa4.68□□□□□ -1.66
PDLIM3-211ENST00000515261 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
PDLIM3-211ENST00000515261 MIR22HGQ0VDD5 57 aa4.67□□□□□ -1.66
PDLIM3-211ENST00000515261 PSPHP1O15172 72 aa4.65□□□□□ -1.67
PDLIM3-211ENST00000515261 LCE3CQ5T5A8 94 aa4.64□□□□□ -1.67
PDLIM3-211ENST00000515261 PCP4P48539 62 aa4.62□□□□□ -1.67
PDLIM3-211ENST00000515261 KRTAP15-1Q3LI76 137 aa4.62□□□□□ -1.67
PDLIM3-211ENST00000515261 K7ERS5 55 aa4.57□□□□□ -1.68
PDLIM3-211ENST00000515261 RPS28P62857 69 aaKnown RBP4.56□□□□□ -1.68
PDLIM3-211ENST00000515261 KRTAP6-2Q3LI66 62 aa4.56□□□□□ -1.68
PDLIM3-211ENST00000515261 A6NED7 52 aa4.51□□□□□ -1.69
PDLIM3-211ENST00000515261 KRTAP9-6A8MVA2 160 aa4.38□□□□□ -1.71
PDLIM3-211ENST00000515261 KRTAP5-1Q6L8H4 278 aa4.38□□□□□ -1.71
PDLIM3-211ENST00000515261 CDC42SE1Q9NRR8 79 aa4.33□□□□□ -1.72
PDLIM3-211ENST00000515261 MT3P25713 68 aa4.32□□□□□ -1.72
PDLIM3-211ENST00000515261 ROMO1P60602 79 aa4.28□□□□□ -1.72
PDLIM3-211ENST00000515261 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
PDLIM3-211ENST00000515261 BRK1Q8WUW1 75 aa4.02□□□□□ -1.77
PDLIM3-211ENST00000515261 SVIPQ8NHG7 77 aa3.97□□□□□ -1.77
PDLIM3-211ENST00000515261 LCE1BQ5T7P3 118 aa3.88□□□□□ -1.79
PDLIM3-211ENST00000515261 PMAIP1Q13794 54 aa3.79□□□□□ -1.8
PDLIM3-211ENST00000515261 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
PDLIM3-211ENST00000515261 PRAC1Q96KF2 57 aa3.61□□□□□ -1.83
PDLIM3-211ENST00000515261 PRO0628Q9UI54 55 aa3.6□□□□□ -1.83
PDLIM3-211ENST00000515261 A0A0A0MQY5 61 aa3.52□□□□□ -1.85
PDLIM3-211ENST00000515261 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
PDLIM3-211ENST00000515261 KRTAP5-11Q6L8G4 156 aa3.46□□□□□ -1.86
PDLIM3-211ENST00000515261 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
PDLIM3-211ENST00000515261 KTN1-AS1Q86SY8 53 aa3.42□□□□□ -1.86
PDLIM3-211ENST00000515261 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
PDLIM3-211ENST00000515261 LCE3DQ9BYE3 92 aa3.27□□□□□ -1.89
PDLIM3-211ENST00000515261 KRTAP21-2Q3LI59 83 aa3.08□□□□□ -1.92
PDLIM3-211ENST00000515261 LUZP6Q538Z0 58 aa3.05□□□□□ -1.92
PDLIM3-211ENST00000515261 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
PDLIM3-211ENST00000515261 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
PDLIM3-211ENST00000515261 MUC19Q7Z5P9 8384 aa2.91□□□□□ -1.94
PDLIM3-211ENST00000515261 NDUFAF8A1L188 74 aa2.85□□□□□ -1.95
PDLIM3-211ENST00000515261 KRTAP21-1Q3LI58 79 aa2.53□□□□□ -2
PDLIM3-211ENST00000515261 PRM1P04553 51 aa2.19□□□□□ -2.06
PDLIM3-211ENST00000515261 INE1O15225 51 aa2.08□□□□□ -2.08
PDLIM3-211ENST00000515261 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 94.5 ms