RNA–Protein interactions for RNA: ENST00000512293.1

PDLIM3-207, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 581 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-207ENST00000512293 LCE3AQ5TA76 89 aa5.93□□□□□ -1.46
PDLIM3-207ENST00000512293 KRTAP20-2Q3LI61 65 aa5.89□□□□□ -1.47
PDLIM3-207ENST00000512293 SPRR5A0A1B0GTR4 108 aa5.86□□□□□ -1.47
PDLIM3-207ENST00000512293 TNP1P09430 55 aa5.86□□□□□ -1.47
PDLIM3-207ENST00000512293 SMIM26A0A096LP01 95 aa5.81□□□□□ -1.48
PDLIM3-207ENST00000512293 KRTAP5-5Q701N2 237 aaPredicted RBP5.81□□□□□ -1.48
PDLIM3-207ENST00000512293 KRTAP4-7Q9BYR0 210 aa5.81□□□□□ -1.48
PDLIM3-207ENST00000512293 ANAPC13Q9BS18 74 aa5.8□□□□□ -1.48
PDLIM3-207ENST00000512293 CCDC179H3BU77 68 aa5.76□□□□□ -1.49
PDLIM3-207ENST00000512293 KRTAP12-4P60329 112 aa5.74□□□□□ -1.49
PDLIM3-207ENST00000512293 KRTAP12-3P60328 96 aa5.73□□□□□ -1.49
PDLIM3-207ENST00000512293 A8MU10 97 aa5.7□□□□□ -1.5
PDLIM3-207ENST00000512293 SYNE1Q8NF91 8797 aaKnown RBP5.67□□□□□ -1.5
PDLIM3-207ENST00000512293 A0A1B0GU69 56 aa5.66□□□□□ -1.5
PDLIM3-207ENST00000512293 ATP5EP56381 51 aaPredicted RBP5.59□□□□□ -1.51
PDLIM3-207ENST00000512293 LOC100996750A0A140TA64 210 aa5.53□□□□□ -1.52
PDLIM3-207ENST00000512293 KRTAP19-4Q3LI73 84 aa5.51□□□□□ -1.53
PDLIM3-207ENST00000512293 LINC01558Q9Y6Z2 57 aa5.51□□□□□ -1.53
PDLIM3-207ENST00000512293 TMEM258P61165 79 aa5.5□□□□□ -1.53
PDLIM3-207ENST00000512293 KRTAP4-11Q9BYQ6 195 aa5.48□□□□□ -1.53
PDLIM3-207ENST00000512293 KRTAP5-2Q701N4 177 aa5.41□□□□□ -1.54
PDLIM3-207ENST00000512293 PRR15LQ9BU68 103 aa5.4□□□□□ -1.54
PDLIM3-207ENST00000512293 KRTAP25-1Q3LHN0 102 aa5.35□□□□□ -1.55
PDLIM3-207ENST00000512293 AHNAKQ09666 5890 aaKnown RBP5.35□□□□□ -1.55
PDLIM3-207ENST00000512293 MUC5ACP98088 5654 aa5.33□□□□□ -1.56
PDLIM3-207ENST00000512293 MUC5BQ9HC84 5762 aaPredicted RBP5.3□□□□□ -1.56
PDLIM3-207ENST00000512293 KRTAP5-8O75690 187 aa5.3□□□□□ -1.56
PDLIM3-207ENST00000512293 UQCR11O14957 56 aa5.28□□□□□ -1.56
PDLIM3-207ENST00000512293 MT1AP04731 61 aa5.26□□□□□ -1.57
PDLIM3-207ENST00000512293 LCE3CQ5T5A8 94 aa5.25□□□□□ -1.57
PDLIM3-207ENST00000512293 KRTAP6-1Q3LI64 71 aa5.24□□□□□ -1.57
PDLIM3-207ENST00000512293 KRTAP15-1Q3LI76 137 aa5.23□□□□□ -1.57
PDLIM3-207ENST00000512293 KRTAP23-1A1A580 65 aa5.19□□□□□ -1.58
PDLIM3-207ENST00000512293 Q1T7F1 81 aa5.19□□□□□ -1.58
PDLIM3-207ENST00000512293 MIR22HGQ0VDD5 57 aa5.18□□□□□ -1.58
PDLIM3-207ENST00000512293 OBSCNQ5VST9 7968 aa5.17□□□□□ -1.58
PDLIM3-207ENST00000512293 PSPHP1O15172 72 aa5.14□□□□□ -1.59
PDLIM3-207ENST00000512293 KRTAP9-4Q9BYQ2 154 aa5.14□□□□□ -1.59
PDLIM3-207ENST00000512293 V9GYY9 64 aa5.13□□□□□ -1.59
PDLIM3-207ENST00000512293 KRTAP9-9Q9BYP9 154 aa5.09□□□□□ -1.59
PDLIM3-207ENST00000512293 KRTAP6-2Q3LI66 62 aa5.08□□□□□ -1.6
PDLIM3-207ENST00000512293 K7ERS5 55 aa5.02□□□□□ -1.61
PDLIM3-207ENST00000512293 RPS28P62857 69 aaKnown RBP4.98□□□□□ -1.61
PDLIM3-207ENST00000512293 KRTAP9-6A8MVA2 160 aa4.95□□□□□ -1.62
PDLIM3-207ENST00000512293 PCP4P48539 62 aa4.95□□□□□ -1.62
PDLIM3-207ENST00000512293 H3BS24 57 aa4.94□□□□□ -1.62
PDLIM3-207ENST00000512293 A6NED7 52 aa4.92□□□□□ -1.62
PDLIM3-207ENST00000512293 KRTAP5-1Q6L8H4 278 aa4.9□□□□□ -1.63
PDLIM3-207ENST00000512293 MT3P25713 68 aa4.84□□□□□ -1.63
PDLIM3-207ENST00000512293 CDC42SE1Q9NRR8 79 aa4.77□□□□□ -1.65
PDLIM3-207ENST00000512293 ROMO1P60602 79 aa4.74□□□□□ -1.65
PDLIM3-207ENST00000512293 LCE1EQ5T753 118 aa4.59□□□□□ -1.67
PDLIM3-207ENST00000512293 KRTAP4-12Q9BQ66 201 aa4.53□□□□□ -1.68
PDLIM3-207ENST00000512293 KRTAP4-2Q9BYR5 136 aa4.33□□□□□ -1.72
PDLIM3-207ENST00000512293 BRK1Q8WUW1 75 aa4.3□□□□□ -1.72
PDLIM3-207ENST00000512293 LCE1CQ5T751 118 aa4.25□□□□□ -1.73
PDLIM3-207ENST00000512293 LCE1BQ5T7P3 118 aa4.25□□□□□ -1.73
PDLIM3-207ENST00000512293 PMAIP1Q13794 54 aa4.03□□□□□ -1.76
PDLIM3-207ENST00000512293 PRAC1Q96KF2 57 aa3.96□□□□□ -1.78
PDLIM3-207ENST00000512293 LCE1FQ5T754 118 aa3.9□□□□□ -1.79
PDLIM3-207ENST00000512293 KRTAP5-11Q6L8G4 156 aa3.9□□□□□ -1.79
PDLIM3-207ENST00000512293 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.84□□□□□ -1.79
PDLIM3-207ENST00000512293 PRO0628Q9UI54 55 aa3.81□□□□□ -1.8
PDLIM3-207ENST00000512293 LCE3DQ9BYE3 92 aa3.7□□□□□ -1.82
PDLIM3-207ENST00000512293 KTN1-AS1Q86SY8 53 aa3.64□□□□□ -1.83
PDLIM3-207ENST00000512293 PHGR1C9JFL3 82 aa3.63□□□□□ -1.83
PDLIM3-207ENST00000512293 SVIPQ8NHG7 77 aa3.61□□□□□ -1.83
PDLIM3-207ENST00000512293 KRTAP21-2Q3LI59 83 aa3.48□□□□□ -1.85
PDLIM3-207ENST00000512293 LCE3EQ5T5B0 92 aa3.41□□□□□ -1.86
PDLIM3-207ENST00000512293 A0A0A0MQY5 61 aa3.28□□□□□ -1.88
PDLIM3-207ENST00000512293 MUC19Q7Z5P9 8384 aa3.21□□□□□ -1.9
PDLIM3-207ENST00000512293 LUZP6Q538Z0 58 aa3.17□□□□□ -1.9
PDLIM3-207ENST00000512293 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
PDLIM3-207ENST00000512293 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
PDLIM3-207ENST00000512293 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
PDLIM3-207ENST00000512293 PRM1P04553 51 aa2.44□□□□□ -2.02
PDLIM3-207ENST00000512293 MUC16Q8WXI7 14507 aa2.28□□□□□ -2.04
PDLIM3-207ENST00000512293 INE1O15225 51 aa2.11□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 75.8 ms