RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 H0YAA0 97 aa1.37□□□□□ -2.19
NUP54-209ENST00000510569 RPS29P62273 56 aaKnown RBP1.36□□□□□ -2.19
NUP54-209ENST00000510569 HMCN2Q8NDA2 5059 aa1.35□□□□□ -2.19
NUP54-209ENST00000510569 KRTAP10-4P60372 401 aaPredicted RBP1.34□□□□□ -2.19
NUP54-209ENST00000510569 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.19
NUP54-209ENST00000510569 DMBT1Q9UGM3 2413 aaPredicted RBP1.32□□□□□ -2.2
NUP54-209ENST00000510569 UBR4Q5T4S7 5183 aa1.32□□□□□ -2.2
NUP54-209ENST00000510569 Q5VSD8 79 aa1.32□□□□□ -2.2
NUP54-209ENST00000510569 C10orf95Q9H7T3 257 aa1.32□□□□□ -2.2
NUP54-209ENST00000510569 LRP2P98164 4655 aa1.31□□□□□ -2.2
NUP54-209ENST00000510569 MUC17Q685J3 4493 aa1.3□□□□□ -2.2
NUP54-209ENST00000510569 SPINK1P00995 79 aa1.3□□□□□ -2.2
NUP54-209ENST00000510569 SPINK6Q6UWN8 80 aa1.29□□□□□ -2.2
NUP54-209ENST00000510569 LPAP08519 4548 aa1.28□□□□□ -2.2
NUP54-209ENST00000510569 SMR3BP02814 79 aaPredicted RBP1.28□□□□□ -2.2
NUP54-209ENST00000510569 FLGP20930 4061 aaPredicted RBP1.28□□□□□ -2.21
NUP54-209ENST00000510569 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
NUP54-209ENST00000510569 H1FX-AS1Q4G0G2 97 aa1.27□□□□□ -2.21
NUP54-209ENST00000510569 MT1HL1P0DM35 61 aa1.25□□□□□ -2.21
NUP54-209ENST00000510569 RNF213Q63HN8 5207 aa1.24□□□□□ -2.21
NUP54-209ENST00000510569 A0A0D9SG42 100 aa1.22□□□□□ -2.21
NUP54-209ENST00000510569 FAT4Q6V0I7 4981 aa1.19□□□□□ -2.22
NUP54-209ENST00000510569 C9orf92A6NGG3 77 aa1.19□□□□□ -2.22
NUP54-209ENST00000510569 KRTAP19-2Q3LHN2 52 aa1.19□□□□□ -2.22
NUP54-209ENST00000510569 MUC2Q02817 5179 aa1.17□□□□□ -2.22
NUP54-209ENST00000510569 S4R3F8 94 aa1.17□□□□□ -2.22
NUP54-209ENST00000510569 M0QZ58 72 aa1.15□□□□□ -2.23
NUP54-209ENST00000510569 MT1HP80294 61 aa1.07□□□□□ -2.24
NUP54-209ENST00000510569 FSIP2Q5CZC0 6907 aa1.06□□□□□ -2.24
NUP54-209ENST00000510569 SPRR2GQ9BYE4 73 aa1.05□□□□□ -2.24
NUP54-209ENST00000510569 SSPOA2VEC9 5147 aa1.04□□□□□ -2.24
NUP54-209ENST00000510569 TNP1P09430 55 aa1.04□□□□□ -2.24
NUP54-209ENST00000510569 USH2AO75445 5202 aa1.03□□□□□ -2.24
NUP54-209ENST00000510569 AHNAK2Q8IVF2 5795 aa1.03□□□□□ -2.24
NUP54-209ENST00000510569 KRTAP19-8Q3LI54 63 aa1.02□□□□□ -2.25
NUP54-209ENST00000510569 KRTAP8-1Q8IUC2 63 aa1.01□□□□□ -2.25
NUP54-209ENST00000510569 M0R2T5 61 aa0.99□□□□□ -2.25
NUP54-209ENST00000510569 MT1BP07438 61 aa0.99□□□□□ -2.25
NUP54-209ENST00000510569 MT2AP02795 61 aa0.98□□□□□ -2.25
NUP54-209ENST00000510569 MT1FP04733 61 aa0.98□□□□□ -2.25
NUP54-209ENST00000510569 MT1XP80297 61 aa0.98□□□□□ -2.25
NUP54-209ENST00000510569 KRTAP19-6Q3LI70 58 aa0.97□□□□□ -2.25
NUP54-209ENST00000510569 SYNE2Q8WXH0 6885 aaKnown RBP0.95□□□□□ -2.26
NUP54-209ENST00000510569 MACF1Q9UPN3 7388 aaKnown RBP0.93□□□□□ -2.26
NUP54-209ENST00000510569 KRTAP2-3P0C7H8 128 aa0.9□□□□□ -2.27
NUP54-209ENST00000510569 KRTAP20-1Q3LI63 56 aa0.9□□□□□ -2.27
NUP54-209ENST00000510569 KRTAP2-4Q9BYR9 128 aa0.9□□□□□ -2.27
NUP54-209ENST00000510569 KRTAP2-1Q9BYU5 128 aa0.9□□□□□ -2.27
NUP54-209ENST00000510569 KMT2DO14686 5537 aa0.9□□□□□ -2.27
NUP54-209ENST00000510569 MUC12Q9UKN1 5478 aa0.89□□□□□ -2.27
NUP54-209ENST00000510569 KRTAP19-5Q3LI72 72 aa0.89□□□□□ -2.27
NUP54-209ENST00000510569 NEBP20929 6669 aa0.88□□□□□ -2.27
NUP54-209ENST00000510569 KRTAP19-7Q3SYF9 63 aa0.88□□□□□ -2.27
NUP54-209ENST00000510569 MDN1Q9NU22 5596 aa0.85□□□□□ -2.27
NUP54-209ENST00000510569 MT1LQ93083 61 aa0.85□□□□□ -2.27
NUP54-209ENST00000510569 MT1EP04732 61 aa0.84□□□□□ -2.27
NUP54-209ENST00000510569 SPRR2EP22531 72 aa0.83□□□□□ -2.28
NUP54-209ENST00000510569 SPRR2BP35325 72 aa0.83□□□□□ -2.28
NUP54-209ENST00000510569 SPRR2AP35326 72 aa0.83□□□□□ -2.28
NUP54-209ENST00000510569 KRTAP19-3Q7Z4W3 81 aa0.82□□□□□ -2.28
NUP54-209ENST00000510569 SPRR2FQ96RM1 72 aa0.82□□□□□ -2.28
NUP54-209ENST00000510569 PRM1P04553 51 aa0.8□□□□□ -2.28
NUP54-209ENST00000510569 SPRR2DP22532 72 aa0.8□□□□□ -2.28
NUP54-209ENST00000510569 MT1MQ8N339 61 aa0.78□□□□□ -2.28
NUP54-209ENST00000510569 MT1GP13640 62 aa0.76□□□□□ -2.29
NUP54-209ENST00000510569 MT1AP04731 61 aa0.75□□□□□ -2.29
NUP54-209ENST00000510569 GPR98Q8WXG9 6306 aa0.72□□□□□ -2.29
NUP54-209ENST00000510569 MT4P47944 62 aa0.7□□□□□ -2.3
NUP54-209ENST00000510569 KRTAP6-1Q3LI64 71 aa0.7□□□□□ -2.3
NUP54-209ENST00000510569 DSTQ03001 7570 aaKnown RBP0.7□□□□□ -2.3
NUP54-209ENST00000510569 SYNE1Q8NF91 8797 aaKnown RBP0.7□□□□□ -2.3
NUP54-209ENST00000510569 AHNAKQ09666 5890 aaKnown RBP0.68□□□□□ -2.3
NUP54-209ENST00000510569 KRTAP20-2Q3LI61 65 aa0.67□□□□□ -2.3
NUP54-209ENST00000510569 KRTAP21-1Q3LI58 79 aa0.66□□□□□ -2.3
NUP54-209ENST00000510569 KRTAP6-2Q3LI66 62 aa0.63□□□□□ -2.31
NUP54-209ENST00000510569 MUC5ACP98088 5654 aa0.62□□□□□ -2.31
NUP54-209ENST00000510569 MUC5BQ9HC84 5762 aaPredicted RBP0.59□□□□□ -2.32
NUP54-209ENST00000510569 PHGR1C9JFL3 82 aa0.45□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 378.4 ms