RNA–Protein interactions for RNA: ENST00000508216.5

PDLIM5-210, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 1,794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-210ENST00000508216 KRTAP10-5P60370 271 aa4.05□□□□□ -1.76
PDLIM5-210ENST00000508216 KRTAP5-11Q6L8G4 156 aa4.04□□□□□ -1.76
PDLIM5-210ENST00000508216 KRTAP12-3P60328 96 aa3.98□□□□□ -1.77
PDLIM5-210ENST00000508216 MT1HL1P0DM35 61 aa3.97□□□□□ -1.77
PDLIM5-210ENST00000508216 LPAP08519 4548 aa3.92□□□□□ -1.78
PDLIM5-210ENST00000508216 LCE3CQ5T5A8 94 aa3.86□□□□□ -1.79
PDLIM5-210ENST00000508216 M0R2T5 61 aa3.84□□□□□ -1.79
PDLIM5-210ENST00000508216 SPRR2GQ9BYE4 73 aa3.84□□□□□ -1.8
PDLIM5-210ENST00000508216 KRTAP19-2Q3LHN2 52 aa3.81□□□□□ -1.8
PDLIM5-210ENST00000508216 KRTAP6-3Q3LI67 103 aa3.79□□□□□ -1.8
PDLIM5-210ENST00000508216 MUC17Q685J3 4493 aa3.77□□□□□ -1.81
PDLIM5-210ENST00000508216 KRTAP9-6A8MVA2 160 aa3.73□□□□□ -1.81
PDLIM5-210ENST00000508216 KRTAP12-4P60329 112 aa3.66□□□□□ -1.82
PDLIM5-210ENST00000508216 KRTAP19-5Q3LI72 72 aa3.65□□□□□ -1.83
PDLIM5-210ENST00000508216 KRTAP5-9P26371 169 aa3.64□□□□□ -1.83
PDLIM5-210ENST00000508216 SSPOA2VEC9 5147 aa3.63□□□□□ -1.83
PDLIM5-210ENST00000508216 SYNE2Q8WXH0 6885 aaKnown RBP3.62□□□□□ -1.83
PDLIM5-210ENST00000508216 FCGBPQ9Y6R7 5405 aaPredicted RBP3.55□□□□□ -1.84
PDLIM5-210ENST00000508216 KRTAP19-8Q3LI54 63 aa3.54□□□□□ -1.84
PDLIM5-210ENST00000508216 MACF1Q9UPN3 7388 aaKnown RBP3.53□□□□□ -1.84
PDLIM5-210ENST00000508216 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
PDLIM5-210ENST00000508216 KRTAP4-1Q9BYQ7 146 aa3.53□□□□□ -1.84
PDLIM5-210ENST00000508216 USH2AO75445 5202 aa3.53□□□□□ -1.84
PDLIM5-210ENST00000508216 MT1XP80297 61 aa3.51□□□□□ -1.85
PDLIM5-210ENST00000508216 LCE3EQ5T5B0 92 aa3.51□□□□□ -1.85
PDLIM5-210ENST00000508216 KRTAP20-1Q3LI63 56 aa3.51□□□□□ -1.85
PDLIM5-210ENST00000508216 KRTAP5-1Q6L8H4 278 aa3.5□□□□□ -1.85
PDLIM5-210ENST00000508216 NEBP20929 6669 aa3.49□□□□□ -1.85
PDLIM5-210ENST00000508216 HMCN1Q96RW7 5635 aa3.46□□□□□ -1.86
PDLIM5-210ENST00000508216 MT1HP80294 61 aa3.44□□□□□ -1.86
PDLIM5-210ENST00000508216 KRTAP4-4Q9BYR3 166 aa3.42□□□□□ -1.86
PDLIM5-210ENST00000508216 MT1BP07438 61 aa3.33□□□□□ -1.88
PDLIM5-210ENST00000508216 PRM1P04553 51 aa3.32□□□□□ -1.88
PDLIM5-210ENST00000508216 MUC12Q9UKN1 5478 aa3.29□□□□□ -1.88
PDLIM5-210ENST00000508216 GPR98Q8WXG9 6306 aa3.28□□□□□ -1.88
PDLIM5-210ENST00000508216 MT1AP04731 61 aa3.27□□□□□ -1.89
PDLIM5-210ENST00000508216 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
PDLIM5-210ENST00000508216 MT1EP04732 61 aa3.23□□□□□ -1.89
PDLIM5-210ENST00000508216 KMT2DO14686 5537 aa3.2□□□□□ -1.9
PDLIM5-210ENST00000508216 KRTAP19-6Q3LI70 58 aa3.19□□□□□ -1.9
PDLIM5-210ENST00000508216 MT1LQ93083 61 aa3.17□□□□□ -1.9
PDLIM5-210ENST00000508216 MT2AP02795 61 aa3.15□□□□□ -1.91
PDLIM5-210ENST00000508216 MT1FP04733 61 aa3.15□□□□□ -1.91
PDLIM5-210ENST00000508216 KRTAP19-7Q3SYF9 63 aa3.13□□□□□ -1.91
PDLIM5-210ENST00000508216 MDN1Q9NU22 5596 aa3.1□□□□□ -1.91
PDLIM5-210ENST00000508216 LCE3DQ9BYE3 92 aa3.07□□□□□ -1.92
PDLIM5-210ENST00000508216 KRTAP5-2Q701N4 177 aa3.03□□□□□ -1.92
PDLIM5-210ENST00000508216 SYNE1Q8NF91 8797 aaKnown RBP3□□□□□ -1.93
PDLIM5-210ENST00000508216 OBSCNQ5VST9 7968 aa2.96□□□□□ -1.94
PDLIM5-210ENST00000508216 KRTAP4-3Q9BYR4 195 aa2.95□□□□□ -1.94
PDLIM5-210ENST00000508216 KRTAP6-2Q3LI66 62 aa2.95□□□□□ -1.94
PDLIM5-210ENST00000508216 SPRR2EP22531 72 aa2.92□□□□□ -1.94
PDLIM5-210ENST00000508216 SPRR2BP35325 72 aa2.92□□□□□ -1.94
PDLIM5-210ENST00000508216 SPRR2AP35326 72 aa2.92□□□□□ -1.94
PDLIM5-210ENST00000508216 SPRR2FQ96RM1 72 aa2.92□□□□□ -1.94
PDLIM5-210ENST00000508216 SPRR2DP22532 72 aa2.83□□□□□ -1.96
PDLIM5-210ENST00000508216 MT1GP13640 62 aa2.82□□□□□ -1.96
PDLIM5-210ENST00000508216 AHNAK2Q8IVF2 5795 aa2.79□□□□□ -1.96
PDLIM5-210ENST00000508216 KRTAP5-10Q6L8G5 202 aa2.77□□□□□ -1.97
PDLIM5-210ENST00000508216 LCE1CQ5T751 118 aa2.75□□□□□ -1.97
PDLIM5-210ENST00000508216 LCE1BQ5T7P3 118 aa2.75□□□□□ -1.97
PDLIM5-210ENST00000508216 DSTQ03001 7570 aaKnown RBP2.74□□□□□ -1.97
PDLIM5-210ENST00000508216 KRTAP5-7Q6L8G8 165 aa2.74□□□□□ -1.97
PDLIM5-210ENST00000508216 MT1MQ8N339 61 aa2.72□□□□□ -1.97
PDLIM5-210ENST00000508216 KRTAP5-8O75690 187 aa2.7□□□□□ -1.98
PDLIM5-210ENST00000508216 KRTAP19-3Q7Z4W3 81 aa2.61□□□□□ -1.99
PDLIM5-210ENST00000508216 KRTAP6-1Q3LI64 71 aa2.59□□□□□ -2
PDLIM5-210ENST00000508216 MT4P47944 62 aa2.53□□□□□ -2
PDLIM5-210ENST00000508216 AHNAKQ09666 5890 aaKnown RBP2.48□□□□□ -2.01
PDLIM5-210ENST00000508216 MUC5BQ9HC84 5762 aaPredicted RBP2.41□□□□□ -2.02
PDLIM5-210ENST00000508216 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
PDLIM5-210ENST00000508216 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
PDLIM5-210ENST00000508216 KRTAP20-2Q3LI61 65 aa2.21□□□□□ -2.06
PDLIM5-210ENST00000508216 MUC19Q7Z5P9 8384 aa2.16□□□□□ -2.06
PDLIM5-210ENST00000508216 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
PDLIM5-210ENST00000508216 PHGR1C9JFL3 82 aa1.65□□□□□ -2.14
PDLIM5-210ENST00000508216 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 144.5 ms