RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 PP632Q6XCG6 107 aa4.15□□□□□ -1.75
HMGCS1-204ENST00000507293 A8MU10 97 aa4.14□□□□□ -1.75
HMGCS1-204ENST00000507293 Q1T7F1 81 aa4.12□□□□□ -1.75
HMGCS1-204ENST00000507293 MT1MQ8N339 61 aa4.12□□□□□ -1.75
HMGCS1-204ENST00000507293 MT4P47944 62 aa4.11□□□□□ -1.75
HMGCS1-204ENST00000507293 LCE4AQ5TA78 99 aa4.11□□□□□ -1.75
HMGCS1-204ENST00000507293 MT1LQ93083 61 aa4.1□□□□□ -1.75
HMGCS1-204ENST00000507293 RPS28P62857 69 aaKnown RBP4.08□□□□□ -1.76
HMGCS1-204ENST00000507293 PSPHP1O15172 72 aa4.07□□□□□ -1.76
HMGCS1-204ENST00000507293 MIR22HGQ0VDD5 57 aa4.07□□□□□ -1.76
HMGCS1-204ENST00000507293 KRTAP4-12Q9BQ66 201 aa4.05□□□□□ -1.76
HMGCS1-204ENST00000507293 KRTAP4-3Q9BYR4 195 aa4.05□□□□□ -1.76
HMGCS1-204ENST00000507293 LCE3AQ5TA76 89 aa4.03□□□□□ -1.76
HMGCS1-204ENST00000507293 C10orf95Q9H7T3 257 aa4.03□□□□□ -1.76
HMGCS1-204ENST00000507293 HMCN1Q96RW7 5635 aa4.02□□□□□ -1.77
HMGCS1-204ENST00000507293 K7ERS5 55 aa4.01□□□□□ -1.77
HMGCS1-204ENST00000507293 KRTAP5-4Q6L8H1 288 aa4.01□□□□□ -1.77
HMGCS1-204ENST00000507293 TNP1P09430 55 aa3.98□□□□□ -1.77
HMGCS1-204ENST00000507293 A6NED7 52 aa3.97□□□□□ -1.77
HMGCS1-204ENST00000507293 KRTAP9-9Q9BYP9 154 aa3.95□□□□□ -1.78
HMGCS1-204ENST00000507293 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
HMGCS1-204ENST00000507293 AHNAK2Q8IVF2 5795 aa3.95□□□□□ -1.78
HMGCS1-204ENST00000507293 KRTAP5-10Q6L8G5 202 aa3.94□□□□□ -1.78
HMGCS1-204ENST00000507293 KRTAP4-7Q9BYR0 210 aa3.9□□□□□ -1.79
HMGCS1-204ENST00000507293 KRTAP12-3P60328 96 aa3.86□□□□□ -1.79
HMGCS1-204ENST00000507293 KRTAP25-1Q3LHN0 102 aa3.83□□□□□ -1.8
HMGCS1-204ENST00000507293 KRTAP5-3Q6L8H2 238 aa3.83□□□□□ -1.8
HMGCS1-204ENST00000507293 CDC42SE1Q9NRR8 79 aa3.82□□□□□ -1.8
HMGCS1-204ENST00000507293 KRTAP5-7Q6L8G8 165 aa3.81□□□□□ -1.8
HMGCS1-204ENST00000507293 KRTAP20-2Q3LI61 65 aa3.8□□□□□ -1.8
HMGCS1-204ENST00000507293 KRTAP5-5Q701N2 237 aaPredicted RBP3.78□□□□□ -1.8
HMGCS1-204ENST00000507293 SPRR5A0A1B0GTR4 108 aa3.75□□□□□ -1.81
HMGCS1-204ENST00000507293 KRTAP12-4P60329 112 aa3.72□□□□□ -1.81
HMGCS1-204ENST00000507293 ROMO1P60602 79 aa3.72□□□□□ -1.81
HMGCS1-204ENST00000507293 KRTAP23-1A1A580 65 aa3.71□□□□□ -1.82
HMGCS1-204ENST00000507293 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
HMGCS1-204ENST00000507293 BRK1Q8WUW1 75 aa3.6□□□□□ -1.83
HMGCS1-204ENST00000507293 KRTAP4-2Q9BYR5 136 aa3.6□□□□□ -1.83
HMGCS1-204ENST00000507293 KRTAP19-4Q3LI73 84 aa3.59□□□□□ -1.83
HMGCS1-204ENST00000507293 H3BS24 57 aa3.58□□□□□ -1.84
HMGCS1-204ENST00000507293 KRTAP15-1Q3LI76 137 aa3.55□□□□□ -1.84
HMGCS1-204ENST00000507293 LCE3CQ5T5A8 94 aa3.54□□□□□ -1.84
HMGCS1-204ENST00000507293 KRTAP4-11Q9BYQ6 195 aa3.53□□□□□ -1.84
HMGCS1-204ENST00000507293 MT1AP04731 61 aa3.49□□□□□ -1.85
HMGCS1-204ENST00000507293 KRTAP5-2Q701N4 177 aa3.49□□□□□ -1.85
HMGCS1-204ENST00000507293 KRTAP6-1Q3LI64 71 aa3.48□□□□□ -1.85
HMGCS1-204ENST00000507293 PMAIP1Q13794 54 aa3.41□□□□□ -1.86
HMGCS1-204ENST00000507293 KRTAP5-8O75690 187 aa3.39□□□□□ -1.87
HMGCS1-204ENST00000507293 KRTAP9-6A8MVA2 160 aa3.35□□□□□ -1.87
HMGCS1-204ENST00000507293 KRTAP6-2Q3LI66 62 aa3.35□□□□□ -1.87
HMGCS1-204ENST00000507293 A0A0A0MQY5 61 aa3.33□□□□□ -1.88
HMGCS1-204ENST00000507293 PRO0628Q9UI54 55 aa3.31□□□□□ -1.88
HMGCS1-204ENST00000507293 MUC5ACP98088 5654 aa3.29□□□□□ -1.88
HMGCS1-204ENST00000507293 OBSCNQ5VST9 7968 aa3.29□□□□□ -1.88
HMGCS1-204ENST00000507293 AHNAKQ09666 5890 aaKnown RBP3.27□□□□□ -1.89
HMGCS1-204ENST00000507293 MUC5BQ9HC84 5762 aaPredicted RBP3.22□□□□□ -1.89
HMGCS1-204ENST00000507293 PRAC1Q96KF2 57 aa3.19□□□□□ -1.9
HMGCS1-204ENST00000507293 MT3P25713 68 aa3.18□□□□□ -1.9
HMGCS1-204ENST00000507293 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.91
HMGCS1-204ENST00000507293 KTN1-AS1Q86SY8 53 aa3.12□□□□□ -1.91
HMGCS1-204ENST00000507293 LCE1EQ5T753 118 aa2.95□□□□□ -1.94
HMGCS1-204ENST00000507293 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
HMGCS1-204ENST00000507293 LUZP6Q538Z0 58 aa2.75□□□□□ -1.97
HMGCS1-204ENST00000507293 LCE1CQ5T751 118 aa2.74□□□□□ -1.97
HMGCS1-204ENST00000507293 LCE3DQ9BYE3 92 aa2.52□□□□□ -2.01
HMGCS1-204ENST00000507293 KRTAP5-11Q6L8G4 156 aa2.51□□□□□ -2.01
HMGCS1-204ENST00000507293 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.48□□□□□ -2.01
HMGCS1-204ENST00000507293 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
HMGCS1-204ENST00000507293 LCE3EQ5T5B0 92 aa2.41□□□□□ -2.02
HMGCS1-204ENST00000507293 NDUFAF8A1L188 74 aa2.36□□□□□ -2.03
HMGCS1-204ENST00000507293 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
HMGCS1-204ENST00000507293 KRTAP21-2Q3LI59 83 aa2.28□□□□□ -2.04
HMGCS1-204ENST00000507293 KRTAP4-4Q9BYR3 166 aa2.13□□□□□ -2.07
HMGCS1-204ENST00000507293 INE1O15225 51 aa2.06□□□□□ -2.08
HMGCS1-204ENST00000507293 MUC19Q7Z5P9 8384 aa2.02□□□□□ -2.09
HMGCS1-204ENST00000507293 PRM1P04553 51 aa1.89□□□□□ -2.11
HMGCS1-204ENST00000507293 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
HMGCS1-204ENST00000507293 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 20.5 ms