RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 MDN1Q9NU22 5596 aa4.63□□□□□ -1.67
SNCA-208ENST00000505199 NEBP20929 6669 aa4.62□□□□□ -1.67
SNCA-208ENST00000505199 MT1EP04732 61 aa4.62□□□□□ -1.67
SNCA-208ENST00000505199 LCE3AQ5TA76 89 aa4.61□□□□□ -1.67
SNCA-208ENST00000505199 KRTAP19-5Q3LI72 72 aa4.58□□□□□ -1.68
SNCA-208ENST00000505199 KRTAP19-3Q7Z4W3 81 aa4.55□□□□□ -1.68
SNCA-208ENST00000505199 LCE5AQ5TCM9 118 aa4.53□□□□□ -1.68
SNCA-208ENST00000505199 SPRR2DP22532 72 aa4.52□□□□□ -1.69
SNCA-208ENST00000505199 KRTAP20-1Q3LI63 56 aa4.52□□□□□ -1.69
SNCA-208ENST00000505199 KRTAP2-3P0C7H8 128 aa4.51□□□□□ -1.69
SNCA-208ENST00000505199 PP632Q6XCG6 107 aa4.51□□□□□ -1.69
SNCA-208ENST00000505199 KRTAP2-4Q9BYR9 128 aa4.51□□□□□ -1.69
SNCA-208ENST00000505199 MT1GP13640 62 aa4.5□□□□□ -1.69
SNCA-208ENST00000505199 KRTAP12-3P60328 96 aa4.5□□□□□ -1.69
SNCA-208ENST00000505199 NDUFAF8A1L188 74 aa4.48□□□□□ -1.69
SNCA-208ENST00000505199 KRTAP19-4Q3LI73 84 aa4.48□□□□□ -1.69
SNCA-208ENST00000505199 MT1LQ93083 61 aa4.45□□□□□ -1.7
SNCA-208ENST00000505199 LOC100996750A0A140TA64 210 aa4.39□□□□□ -1.71
SNCA-208ENST00000505199 KRTAP4-6Q9BYQ5 205 aa4.39□□□□□ -1.71
SNCA-208ENST00000505199 KRTAP2-2Q9BYT5 123 aa4.39□□□□□ -1.71
SNCA-208ENST00000505199 KRTAP2-1Q9BYU5 128 aa4.39□□□□□ -1.71
SNCA-208ENST00000505199 LCE3BQ5TA77 95 aa4.38□□□□□ -1.71
SNCA-208ENST00000505199 MT1MQ8N339 61 aa4.37□□□□□ -1.71
SNCA-208ENST00000505199 KRTAP15-1Q3LI76 137 aa4.31□□□□□ -1.72
SNCA-208ENST00000505199 DSTQ03001 7570 aaKnown RBP4.19□□□□□ -1.74
SNCA-208ENST00000505199 LCE3CQ5T5A8 94 aa4.17□□□□□ -1.74
SNCA-208ENST00000505199 KRTAP4-7Q9BYR0 210 aa4.14□□□□□ -1.75
SNCA-208ENST00000505199 KRTAP4-3Q9BYR4 195 aa4.14□□□□□ -1.75
SNCA-208ENST00000505199 LCE4AQ5TA78 99 aa4.09□□□□□ -1.75
SNCA-208ENST00000505199 KRTAP5-4Q6L8H1 288 aa4.06□□□□□ -1.76
SNCA-208ENST00000505199 KRTAP4-12Q9BQ66 201 aa4.04□□□□□ -1.76
SNCA-208ENST00000505199 KRTAP5-5Q701N2 237 aaPredicted RBP4.02□□□□□ -1.77
SNCA-208ENST00000505199 INE1O15225 51 aa3.97□□□□□ -1.77
SNCA-208ENST00000505199 LCE1DQ5T752 114 aa3.93□□□□□ -1.78
SNCA-208ENST00000505199 KRTAP4-9Q9BYQ8 210 aa3.91□□□□□ -1.78
SNCA-208ENST00000505199 MT4P47944 62 aa3.87□□□□□ -1.79
SNCA-208ENST00000505199 SPRR5A0A1B0GTR4 108 aa3.86□□□□□ -1.79
SNCA-208ENST00000505199 KRTAP9-6A8MVA2 160 aa3.86□□□□□ -1.79
SNCA-208ENST00000505199 KRTAP12-4P60329 112 aa3.86□□□□□ -1.79
SNCA-208ENST00000505199 KRTAP9-9Q9BYP9 154 aa3.86□□□□□ -1.79
SNCA-208ENST00000505199 KRTAP9-4Q9BYQ2 154 aa3.86□□□□□ -1.79
SNCA-208ENST00000505199 MT1AP04731 61 aa3.82□□□□□ -1.8
SNCA-208ENST00000505199 HMCN1Q96RW7 5635 aa3.79□□□□□ -1.8
SNCA-208ENST00000505199 KRTAP20-2Q3LI61 65 aa3.77□□□□□ -1.81
SNCA-208ENST00000505199 KRTAP6-1Q3LI64 71 aa3.72□□□□□ -1.81
SNCA-208ENST00000505199 SYNE1Q8NF91 8797 aaKnown RBP3.7□□□□□ -1.82
SNCA-208ENST00000505199 KRTAP5-3Q6L8H2 238 aa3.66□□□□□ -1.82
SNCA-208ENST00000505199 KRTAP5-2Q701N4 177 aa3.6□□□□□ -1.83
SNCA-208ENST00000505199 KRTAP5-10Q6L8G5 202 aa3.55□□□□□ -1.84
SNCA-208ENST00000505199 KRTAP6-2Q3LI66 62 aa3.51□□□□□ -1.85
SNCA-208ENST00000505199 MT3P25713 68 aa3.5□□□□□ -1.85
SNCA-208ENST00000505199 GPR98Q8WXG9 6306 aa3.49□□□□□ -1.85
SNCA-208ENST00000505199 AHNAK2Q8IVF2 5795 aa3.48□□□□□ -1.85
SNCA-208ENST00000505199 KRTAP4-11Q9BYQ6 195 aa3.46□□□□□ -1.86
SNCA-208ENST00000505199 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
SNCA-208ENST00000505199 KRTAP5-7Q6L8G8 165 aa3.4□□□□□ -1.87
SNCA-208ENST00000505199 KRTAP5-8O75690 187 aa3.26□□□□□ -1.89
SNCA-208ENST00000505199 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
SNCA-208ENST00000505199 OBSCNQ5VST9 7968 aa3.17□□□□□ -1.9
SNCA-208ENST00000505199 KRTAP5-1Q6L8H4 278 aa3.16□□□□□ -1.9
SNCA-208ENST00000505199 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
SNCA-208ENST00000505199 LCE1CQ5T751 118 aa2.96□□□□□ -1.94
SNCA-208ENST00000505199 LCE1BQ5T7P3 118 aa2.96□□□□□ -1.94
SNCA-208ENST00000505199 LCE3EQ5T5B0 92 aa2.94□□□□□ -1.94
SNCA-208ENST00000505199 MUC5ACP98088 5654 aa2.92□□□□□ -1.94
SNCA-208ENST00000505199 MUC5BQ9HC84 5762 aaPredicted RBP2.85□□□□□ -1.95
SNCA-208ENST00000505199 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.76□□□□□ -1.97
SNCA-208ENST00000505199 AHNAKQ09666 5890 aaKnown RBP2.75□□□□□ -1.97
SNCA-208ENST00000505199 KRTAP5-11Q6L8G4 156 aa2.65□□□□□ -1.99
SNCA-208ENST00000505199 LCE1FQ5T754 118 aa2.56□□□□□ -2
SNCA-208ENST00000505199 KRTAP21-2Q3LI59 83 aa2.48□□□□□ -2.01
SNCA-208ENST00000505199 PRM1P04553 51 aa2.3□□□□□ -2.04
SNCA-208ENST00000505199 PHGR1C9JFL3 82 aa2.27□□□□□ -2.05
SNCA-208ENST00000505199 KRTAP4-4Q9BYR3 166 aa2.1□□□□□ -2.07
SNCA-208ENST00000505199 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
SNCA-208ENST00000505199 KRTAP21-1Q3LI58 79 aa1.59□□□□□ -2.15
SNCA-208ENST00000505199 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 33.4 ms