RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 KRTAP10-7P60409 375 aaPredicted RBP4.17□□□□□ -1.74
TPM3-217ENST00000504663 PRO2289Q9P1D8 64 aa4.17□□□□□ -1.74
TPM3-217ENST00000504663 CRCT1Q9UGL9 99 aa4.15□□□□□ -1.75
TPM3-217ENST00000504663 KRTAP10-12P60413 245 aa4.13□□□□□ -1.75
TPM3-217ENST00000504663 KTN1-AS1Q86SY8 53 aa4.11□□□□□ -1.75
TPM3-217ENST00000504663 KRTAP25-1Q3LHN0 102 aa4.1□□□□□ -1.75
TPM3-217ENST00000504663 KMT2DO14686 5537 aa4.08□□□□□ -1.76
TPM3-217ENST00000504663 TNP1P09430 55 aa4.08□□□□□ -1.76
TPM3-217ENST00000504663 LCE3AQ5TA76 89 aa4.03□□□□□ -1.76
TPM3-217ENST00000504663 MACF1Q9UPN3 7388 aaKnown RBP3.99□□□□□ -1.77
TPM3-217ENST00000504663 KRTAP8-1Q8IUC2 63 aa3.95□□□□□ -1.78
TPM3-217ENST00000504663 SYNE2Q8WXH0 6885 aaKnown RBP3.92□□□□□ -1.78
TPM3-217ENST00000504663 KRTAP19-7Q3SYF9 63 aa3.91□□□□□ -1.78
TPM3-217ENST00000504663 PP632Q6XCG6 107 aa3.9□□□□□ -1.79
TPM3-217ENST00000504663 LCE1FQ5T754 118 aa3.89□□□□□ -1.79
TPM3-217ENST00000504663 KRTAP19-5Q3LI72 72 aa3.88□□□□□ -1.79
TPM3-217ENST00000504663 MT1EP04732 61 aa3.83□□□□□ -1.8
TPM3-217ENST00000504663 KRTAP12-3P60328 96 aa3.83□□□□□ -1.8
TPM3-217ENST00000504663 KRTAP5-9P26371 169 aa3.82□□□□□ -1.8
TPM3-217ENST00000504663 MUC12Q9UKN1 5478 aa3.79□□□□□ -1.8
TPM3-217ENST00000504663 KRTAP2-2Q9BYT5 123 aa3.78□□□□□ -1.8
TPM3-217ENST00000504663 KRTAP6-3Q3LI67 103 aa3.75□□□□□ -1.81
TPM3-217ENST00000504663 SPRR2FQ96RM1 72 aa3.74□□□□□ -1.81
TPM3-217ENST00000504663 MT1LQ93083 61 aa3.73□□□□□ -1.81
TPM3-217ENST00000504663 MDN1Q9NU22 5596 aa3.69□□□□□ -1.82
TPM3-217ENST00000504663 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
TPM3-217ENST00000504663 KRTAP19-3Q7Z4W3 81 aa3.67□□□□□ -1.82
TPM3-217ENST00000504663 NEBP20929 6669 aa3.67□□□□□ -1.82
TPM3-217ENST00000504663 MT1MQ8N339 61 aa3.6□□□□□ -1.83
TPM3-217ENST00000504663 MT1GP13640 62 aa3.59□□□□□ -1.83
TPM3-217ENST00000504663 SPRR2EP22531 72 aa3.58□□□□□ -1.84
TPM3-217ENST00000504663 SPRR2BP35325 72 aa3.58□□□□□ -1.84
TPM3-217ENST00000504663 SPRR2AP35326 72 aa3.58□□□□□ -1.84
TPM3-217ENST00000504663 LCE3CQ5T5A8 94 aa3.58□□□□□ -1.84
TPM3-217ENST00000504663 SPRR5A0A1B0GTR4 108 aa3.56□□□□□ -1.84
TPM3-217ENST00000504663 KRTAP4-3Q9BYR4 195 aa3.54□□□□□ -1.84
TPM3-217ENST00000504663 KRTAP9-6A8MVA2 160 aa3.48□□□□□ -1.85
TPM3-217ENST00000504663 GPR98Q8WXG9 6306 aa3.46□□□□□ -1.86
TPM3-217ENST00000504663 KRTAP20-1Q3LI63 56 aa3.46□□□□□ -1.86
TPM3-217ENST00000504663 KRTAP5-11Q6L8G4 156 aa3.45□□□□□ -1.86
TPM3-217ENST00000504663 SPRR2DP22532 72 aa3.44□□□□□ -1.86
TPM3-217ENST00000504663 DSTQ03001 7570 aaKnown RBP3.35□□□□□ -1.87
TPM3-217ENST00000504663 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
TPM3-217ENST00000504663 LCE3EQ5T5B0 92 aa3.27□□□□□ -1.89
TPM3-217ENST00000504663 LCE1EQ5T753 118 aa3.27□□□□□ -1.89
TPM3-217ENST00000504663 KRTAP2-3P0C7H8 128 aa3.26□□□□□ -1.89
TPM3-217ENST00000504663 KRTAP2-4Q9BYR9 128 aa3.26□□□□□ -1.89
TPM3-217ENST00000504663 KRTAP5-4Q6L8H1 288 aa3.2□□□□□ -1.9
TPM3-217ENST00000504663 KRTAP2-1Q9BYU5 128 aa3.18□□□□□ -1.9
TPM3-217ENST00000504663 SYNE1Q8NF91 8797 aaKnown RBP3.16□□□□□ -1.9
TPM3-217ENST00000504663 MT1AP04731 61 aa3.16□□□□□ -1.9
TPM3-217ENST00000504663 KRTAP6-1Q3LI64 71 aa3.15□□□□□ -1.91
TPM3-217ENST00000504663 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.91
TPM3-217ENST00000504663 INE1O15225 51 aa3.09□□□□□ -1.91
TPM3-217ENST00000504663 KRTAP4-4Q9BYR3 166 aa3.08□□□□□ -1.92
TPM3-217ENST00000504663 HMCN1Q96RW7 5635 aa3.01□□□□□ -1.93
TPM3-217ENST00000504663 MT4P47944 62 aa2.99□□□□□ -1.93
TPM3-217ENST00000504663 KRTAP20-2Q3LI61 65 aa2.96□□□□□ -1.94
TPM3-217ENST00000504663 KRTAP12-4P60329 112 aa2.94□□□□□ -1.94
TPM3-217ENST00000504663 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
TPM3-217ENST00000504663 AHNAK2Q8IVF2 5795 aa2.91□□□□□ -1.94
TPM3-217ENST00000504663 KRTAP6-2Q3LI66 62 aa2.89□□□□□ -1.95
TPM3-217ENST00000504663 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
TPM3-217ENST00000504663 KRTAP5-7Q6L8G8 165 aa2.75□□□□□ -1.97
TPM3-217ENST00000504663 KRTAP5-10Q6L8G5 202 aa2.73□□□□□ -1.97
TPM3-217ENST00000504663 OBSCNQ5VST9 7968 aa2.71□□□□□ -1.98
TPM3-217ENST00000504663 AHNAKQ09666 5890 aaKnown RBP2.63□□□□□ -1.99
TPM3-217ENST00000504663 KRTAP5-8O75690 187 aa2.51□□□□□ -2.01
TPM3-217ENST00000504663 MUC5ACP98088 5654 aa2.5□□□□□ -2.01
TPM3-217ENST00000504663 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
TPM3-217ENST00000504663 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
TPM3-217ENST00000504663 LCE1BQ5T7P3 118 aa2.33□□□□□ -2.04
TPM3-217ENST00000504663 PRM1P04553 51 aa2.21□□□□□ -2.06
TPM3-217ENST00000504663 KRTAP21-2Q3LI59 83 aa2.09□□□□□ -2.07
TPM3-217ENST00000504663 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
TPM3-217ENST00000504663 MUC19Q7Z5P9 8384 aa1.74□□□□□ -2.13
TPM3-217ENST00000504663 KRTAP21-1Q3LI58 79 aa1.37□□□□□ -2.19
TPM3-217ENST00000504663 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 55.2 ms