RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 KRTAP5-3Q6L8H2 238 aa4.39□□□□□ -1.71
MED28-203ENST00000503945 MT1GP13640 62 aa4.36□□□□□ -1.71
MED28-203ENST00000503945 KRTAP19-5Q3LI72 72 aa4.36□□□□□ -1.71
MED28-203ENST00000503945 CCDC179H3BU77 68 aa4.34□□□□□ -1.71
MED28-203ENST00000503945 PP632Q6XCG6 107 aa4.33□□□□□ -1.72
MED28-203ENST00000503945 HMCN1Q96RW7 5635 aa4.33□□□□□ -1.72
MED28-203ENST00000503945 A8MU10 97 aa4.32□□□□□ -1.72
MED28-203ENST00000503945 TNP1P09430 55 aa4.29□□□□□ -1.72
MED28-203ENST00000503945 MT4P47944 62 aa4.28□□□□□ -1.72
MED28-203ENST00000503945 PRR15LQ9BU68 103 aa4.28□□□□□ -1.72
MED28-203ENST00000503945 AHNAK2Q8IVF2 5795 aa4.27□□□□□ -1.73
MED28-203ENST00000503945 C10orf95Q9H7T3 257 aa4.25□□□□□ -1.73
MED28-203ENST00000503945 SVIPQ8NHG7 77 aa4.24□□□□□ -1.73
MED28-203ENST00000503945 MT1MQ8N339 61 aa4.23□□□□□ -1.73
MED28-203ENST00000503945 MT1LQ93083 61 aa4.23□□□□□ -1.73
MED28-203ENST00000503945 ATP5EP56381 51 aaPredicted RBP4.21□□□□□ -1.74
MED28-203ENST00000503945 LCE3AQ5TA76 89 aa4.21□□□□□ -1.74
MED28-203ENST00000503945 KRTAP5-10Q6L8G5 202 aa4.19□□□□□ -1.74
MED28-203ENST00000503945 LINC01558Q9Y6Z2 57 aa4.18□□□□□ -1.74
MED28-203ENST00000503945 TMEM258P61165 79 aa4.16□□□□□ -1.74
MED28-203ENST00000503945 KRTAP4-3Q9BYR4 195 aa4.16□□□□□ -1.74
MED28-203ENST00000503945 KRTAP5-4Q6L8H1 288 aa4.15□□□□□ -1.75
MED28-203ENST00000503945 UQCR11O14957 56 aa4.13□□□□□ -1.75
MED28-203ENST00000503945 KRTAP12-3P60328 96 aa4.09□□□□□ -1.75
MED28-203ENST00000503945 KRTAP5-7Q6L8G8 165 aa4.06□□□□□ -1.76
MED28-203ENST00000503945 MIR22HGQ0VDD5 57 aa4.02□□□□□ -1.77
MED28-203ENST00000503945 K7ERS5 55 aa4.01□□□□□ -1.77
MED28-203ENST00000503945 KRTAP25-1Q3LHN0 102 aa4□□□□□ -1.77
MED28-203ENST00000503945 A0A0A0MQY5 61 aa3.94□□□□□ -1.78
MED28-203ENST00000503945 KRTAP20-2Q3LI61 65 aa3.93□□□□□ -1.78
MED28-203ENST00000503945 V9GYY9 64 aa3.93□□□□□ -1.78
MED28-203ENST00000503945 PCP4P48539 62 aa3.92□□□□□ -1.78
MED28-203ENST00000503945 Q1T7F1 81 aa3.9□□□□□ -1.79
MED28-203ENST00000503945 PSPHP1O15172 72 aa3.89□□□□□ -1.79
MED28-203ENST00000503945 SPRR5A0A1B0GTR4 108 aa3.88□□□□□ -1.79
MED28-203ENST00000503945 KRTAP12-4P60329 112 aa3.87□□□□□ -1.79
MED28-203ENST00000503945 KRTAP5-5Q701N2 237 aaPredicted RBP3.86□□□□□ -1.79
MED28-203ENST00000503945 SYNE1Q8NF91 8797 aaKnown RBP3.8□□□□□ -1.8
MED28-203ENST00000503945 RPS28P62857 69 aaKnown RBP3.8□□□□□ -1.8
MED28-203ENST00000503945 LCE3CQ5T5A8 94 aa3.77□□□□□ -1.81
MED28-203ENST00000503945 A6NED7 52 aa3.76□□□□□ -1.81
MED28-203ENST00000503945 CDC42SE1Q9NRR8 79 aa3.74□□□□□ -1.81
MED28-203ENST00000503945 ROMO1P60602 79 aa3.67□□□□□ -1.82
MED28-203ENST00000503945 MT1AP04731 61 aa3.6□□□□□ -1.83
MED28-203ENST00000503945 AHNAKQ09666 5890 aaKnown RBP3.59□□□□□ -1.84
MED28-203ENST00000503945 KRTAP6-1Q3LI64 71 aa3.58□□□□□ -1.84
MED28-203ENST00000503945 KRTAP5-2Q701N4 177 aa3.58□□□□□ -1.84
MED28-203ENST00000503945 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
MED28-203ENST00000503945 MUC5BQ9HC84 5762 aaPredicted RBP3.53□□□□□ -1.84
MED28-203ENST00000503945 MUC5ACP98088 5654 aa3.53□□□□□ -1.84
MED28-203ENST00000503945 KRTAP9-6A8MVA2 160 aa3.5□□□□□ -1.85
MED28-203ENST00000503945 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
MED28-203ENST00000503945 KRTAP6-2Q3LI66 62 aa3.45□□□□□ -1.86
MED28-203ENST00000503945 BRK1Q8WUW1 75 aa3.37□□□□□ -1.87
MED28-203ENST00000503945 MT3P25713 68 aa3.34□□□□□ -1.87
MED28-203ENST00000503945 KRTAP5-1Q6L8H4 278 aa3.27□□□□□ -1.89
MED28-203ENST00000503945 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
MED28-203ENST00000503945 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
MED28-203ENST00000503945 PRAC1Q96KF2 57 aa3.24□□□□□ -1.89
MED28-203ENST00000503945 KRTAP5-11Q6L8G4 156 aa3.18□□□□□ -1.9
MED28-203ENST00000503945 PMAIP1Q13794 54 aa3.16□□□□□ -1.9
MED28-203ENST00000503945 LCE1EQ5T753 118 aa3.12□□□□□ -1.91
MED28-203ENST00000503945 NDUFAF8A1L188 74 aa3.03□□□□□ -1.92
MED28-203ENST00000503945 PRO0628Q9UI54 55 aa3.03□□□□□ -1.92
MED28-203ENST00000503945 LCE1BQ5T7P3 118 aa2.91□□□□□ -1.94
MED28-203ENST00000503945 KTN1-AS1Q86SY8 53 aa2.87□□□□□ -1.95
MED28-203ENST00000503945 LCE1CQ5T751 118 aa2.85□□□□□ -1.95
MED28-203ENST00000503945 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
MED28-203ENST00000503945 LCE3DQ9BYE3 92 aa2.72□□□□□ -1.97
MED28-203ENST00000503945 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
MED28-203ENST00000503945 LUZP6Q538Z0 58 aa2.52□□□□□ -2.01
MED28-203ENST00000503945 PHGR1C9JFL3 82 aa2.45□□□□□ -2.02
MED28-203ENST00000503945 KRTAP21-2Q3LI59 83 aa2.36□□□□□ -2.03
MED28-203ENST00000503945 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
MED28-203ENST00000503945 PRM1P04553 51 aa1.85□□□□□ -2.11
MED28-203ENST00000503945 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
MED28-203ENST00000503945 INE1O15225 51 aa1.72□□□□□ -2.13
MED28-203ENST00000503945 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 85.2 ms