RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 MT1XP80297 61 aa3.98□□□□□ -1.77
CLIP1-204ENST00000501271 KRTAP20-1Q3LI63 56 aa3.92□□□□□ -1.78
CLIP1-204ENST00000501271 KRTAP8-1Q8IUC2 63 aa3.91□□□□□ -1.78
CLIP1-204ENST00000501271 KRTAP10-12P60413 245 aa3.88□□□□□ -1.79
CLIP1-204ENST00000501271 KRTAP10-7P60409 375 aaPredicted RBP3.87□□□□□ -1.79
CLIP1-204ENST00000501271 SSPOA2VEC9 5147 aa3.87□□□□□ -1.79
CLIP1-204ENST00000501271 MUC5BQ9HC84 5762 aaPredicted RBP3.83□□□□□ -1.8
CLIP1-204ENST00000501271 KRTAP12-3P60328 96 aa3.82□□□□□ -1.8
CLIP1-204ENST00000501271 PRO2289Q9P1D8 64 aa3.8□□□□□ -1.8
CLIP1-204ENST00000501271 USH2AO75445 5202 aa3.79□□□□□ -1.8
CLIP1-204ENST00000501271 KMT2DO14686 5537 aa3.72□□□□□ -1.81
CLIP1-204ENST00000501271 KRTAP19-5Q3LI72 72 aa3.69□□□□□ -1.82
CLIP1-204ENST00000501271 NEBP20929 6669 aa3.65□□□□□ -1.83
CLIP1-204ENST00000501271 LCE3CQ5T5A8 94 aa3.6□□□□□ -1.83
CLIP1-204ENST00000501271 AHNAKQ09666 5890 aaKnown RBP3.59□□□□□ -1.83
CLIP1-204ENST00000501271 KRTAP19-7Q3SYF9 63 aa3.55□□□□□ -1.84
CLIP1-204ENST00000501271 KRTAP5-7Q6L8G8 165 aa3.51□□□□□ -1.85
CLIP1-204ENST00000501271 KRTAP9-6A8MVA2 160 aa3.49□□□□□ -1.85
CLIP1-204ENST00000501271 MT1EP04732 61 aa3.44□□□□□ -1.86
CLIP1-204ENST00000501271 MT1LQ93083 61 aa3.43□□□□□ -1.86
CLIP1-204ENST00000501271 KRTAP19-6Q3LI70 58 aa3.43□□□□□ -1.86
CLIP1-204ENST00000501271 INE1O15225 51 aa3.42□□□□□ -1.86
CLIP1-204ENST00000501271 KRTAP2-3P0C7H8 128 aa3.42□□□□□ -1.86
CLIP1-204ENST00000501271 KRTAP2-4Q9BYR9 128 aa3.42□□□□□ -1.86
CLIP1-204ENST00000501271 FSIP2Q5CZC0 6907 aa3.41□□□□□ -1.86
CLIP1-204ENST00000501271 KRTAP6-3Q3LI67 103 aa3.38□□□□□ -1.87
CLIP1-204ENST00000501271 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
CLIP1-204ENST00000501271 FCGBPQ9Y6R7 5405 aaPredicted RBP3.33□□□□□ -1.88
CLIP1-204ENST00000501271 KRTAP2-1Q9BYU5 128 aa3.33□□□□□ -1.88
CLIP1-204ENST00000501271 HMCN1Q96RW7 5635 aa3.31□□□□□ -1.88
CLIP1-204ENST00000501271 MUC12Q9UKN1 5478 aa3.29□□□□□ -1.88
CLIP1-204ENST00000501271 KRTAP4-3Q9BYR4 195 aa3.27□□□□□ -1.89
CLIP1-204ENST00000501271 LCE1AQ5T7P2 110 aa3.23□□□□□ -1.89
CLIP1-204ENST00000501271 KRTAP19-3Q7Z4W3 81 aa3.22□□□□□ -1.89
CLIP1-204ENST00000501271 MT1MQ8N339 61 aa3.22□□□□□ -1.89
CLIP1-204ENST00000501271 MT1GP13640 62 aa3.2□□□□□ -1.9
CLIP1-204ENST00000501271 SYNE2Q8WXH0 6885 aaKnown RBP3.18□□□□□ -1.9
CLIP1-204ENST00000501271 AHNAK2Q8IVF2 5795 aa3.17□□□□□ -1.9
CLIP1-204ENST00000501271 KRTAP2-2Q9BYT5 123 aa3.15□□□□□ -1.9
CLIP1-204ENST00000501271 MACF1Q9UPN3 7388 aaKnown RBP3.14□□□□□ -1.91
CLIP1-204ENST00000501271 SPRR2FQ96RM1 72 aa3.13□□□□□ -1.91
CLIP1-204ENST00000501271 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
CLIP1-204ENST00000501271 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.12□□□□□ -1.91
CLIP1-204ENST00000501271 DSTQ03001 7570 aaKnown RBP3.1□□□□□ -1.91
CLIP1-204ENST00000501271 KRTAP5-9P26371 169 aa3.05□□□□□ -1.92
CLIP1-204ENST00000501271 MDN1Q9NU22 5596 aa3□□□□□ -1.93
CLIP1-204ENST00000501271 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
CLIP1-204ENST00000501271 KRTAP6-1Q3LI64 71 aa2.92□□□□□ -1.94
CLIP1-204ENST00000501271 KRTAP12-4P60329 112 aa2.92□□□□□ -1.94
CLIP1-204ENST00000501271 MT1AP04731 61 aa2.88□□□□□ -1.95
CLIP1-204ENST00000501271 KRTAP5-11Q6L8G4 156 aa2.88□□□□□ -1.95
CLIP1-204ENST00000501271 LCE1EQ5T753 118 aa2.86□□□□□ -1.95
CLIP1-204ENST00000501271 KRTAP5-5Q701N2 237 aaPredicted RBP2.86□□□□□ -1.95
CLIP1-204ENST00000501271 SPRR2EP22531 72 aa2.85□□□□□ -1.95
CLIP1-204ENST00000501271 SPRR2BP35325 72 aa2.85□□□□□ -1.95
CLIP1-204ENST00000501271 SPRR2AP35326 72 aa2.85□□□□□ -1.95
CLIP1-204ENST00000501271 SYNE1Q8NF91 8797 aaKnown RBP2.84□□□□□ -1.95
CLIP1-204ENST00000501271 MUC5ACP98088 5654 aa2.83□□□□□ -1.96
CLIP1-204ENST00000501271 MT3P25713 68 aa2.76□□□□□ -1.97
CLIP1-204ENST00000501271 LCE3DQ9BYE3 92 aa2.76□□□□□ -1.97
CLIP1-204ENST00000501271 SPRR2DP22532 72 aa2.73□□□□□ -1.97
CLIP1-204ENST00000501271 KRTAP5-4Q6L8H1 288 aa2.69□□□□□ -1.98
CLIP1-204ENST00000501271 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
CLIP1-204ENST00000501271 KRTAP6-2Q3LI66 62 aa2.62□□□□□ -1.99
CLIP1-204ENST00000501271 PRM1P04553 51 aa2.59□□□□□ -2
CLIP1-204ENST00000501271 KRTAP4-4Q9BYR3 166 aa2.57□□□□□ -2
CLIP1-204ENST00000501271 OBSCNQ5VST9 7968 aa2.53□□□□□ -2
CLIP1-204ENST00000501271 KRTAP5-8O75690 187 aa2.43□□□□□ -2.02
CLIP1-204ENST00000501271 MT4P47944 62 aa2.41□□□□□ -2.02
CLIP1-204ENST00000501271 KRTAP5-2Q701N4 177 aa2.41□□□□□ -2.02
CLIP1-204ENST00000501271 KRTAP20-2Q3LI61 65 aa2.38□□□□□ -2.03
CLIP1-204ENST00000501271 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
CLIP1-204ENST00000501271 LCE1BQ5T7P3 118 aa2.09□□□□□ -2.07
CLIP1-204ENST00000501271 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
CLIP1-204ENST00000501271 KRTAP21-2Q3LI59 83 aa1.89□□□□□ -2.11
CLIP1-204ENST00000501271 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
CLIP1-204ENST00000501271 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
CLIP1-204ENST00000501271 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 25.7 ms