RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 COA5Q86WW8 74 aa4.85□□□□□ -1.63
TRAF4-212ENST00000498540 TNP1P09430 55 aa4.82□□□□□ -1.64
TRAF4-212ENST00000498540 KRTAP12-4P60329 112 aa4.81□□□□□ -1.64
TRAF4-212ENST00000498540 KRTAP12-3P60328 96 aa4.76□□□□□ -1.65
TRAF4-212ENST00000498540 A8MU10 97 aa4.74□□□□□ -1.65
TRAF4-212ENST00000498540 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.66
TRAF4-212ENST00000498540 SMIM26A0A096LP01 95 aa4.71□□□□□ -1.66
TRAF4-212ENST00000498540 LOC100996750A0A140TA64 210 aa4.71□□□□□ -1.66
TRAF4-212ENST00000498540 SERP2Q8N6R1 65 aa4.67□□□□□ -1.66
TRAF4-212ENST00000498540 KRTAP4-11Q9BYQ6 195 aa4.65□□□□□ -1.67
TRAF4-212ENST00000498540 A0A1B0GU69 56 aa4.59□□□□□ -1.67
TRAF4-212ENST00000498540 K7ERU9 68 aa4.55□□□□□ -1.68
TRAF4-212ENST00000498540 KRTAP5-2Q701N4 177 aa4.54□□□□□ -1.68
TRAF4-212ENST00000498540 KRTAP5-8O75690 187 aa4.51□□□□□ -1.69
TRAF4-212ENST00000498540 MUC5ACP98088 5654 aa4.49□□□□□ -1.69
TRAF4-212ENST00000498540 AHNAKQ09666 5890 aaKnown RBP4.47□□□□□ -1.69
TRAF4-212ENST00000498540 H7BZZ5 65 aa4.46□□□□□ -1.7
TRAF4-212ENST00000498540 MUC5BQ9HC84 5762 aaPredicted RBP4.44□□□□□ -1.7
TRAF4-212ENST00000498540 KRTAP6-1Q3LI64 71 aa4.43□□□□□ -1.7
TRAF4-212ENST00000498540 MT1AP04731 61 aa4.4□□□□□ -1.71
TRAF4-212ENST00000498540 COX7CP15954 63 aa4.4□□□□□ -1.71
TRAF4-212ENST00000498540 KRTAP19-4Q3LI73 84 aa4.39□□□□□ -1.71
TRAF4-212ENST00000498540 KRTAP25-1Q3LHN0 102 aa4.34□□□□□ -1.71
TRAF4-212ENST00000498540 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.71
TRAF4-212ENST00000498540 KRTAP9-9Q9BYP9 154 aa4.32□□□□□ -1.72
TRAF4-212ENST00000498540 OBSCNQ5VST9 7968 aa4.32□□□□□ -1.72
TRAF4-212ENST00000498540 PRR15LQ9BU68 103 aa4.31□□□□□ -1.72
TRAF4-212ENST00000498540 KRTAP6-2Q3LI66 62 aa4.3□□□□□ -1.72
TRAF4-212ENST00000498540 KRTAP15-1Q3LI76 137 aa4.3□□□□□ -1.72
TRAF4-212ENST00000498540 KRTAP9-4Q9BYQ2 154 aa4.29□□□□□ -1.72
TRAF4-212ENST00000498540 LINC01558Q9Y6Z2 57 aa4.2□□□□□ -1.74
TRAF4-212ENST00000498540 UQCR11O14957 56 aa4.17□□□□□ -1.74
TRAF4-212ENST00000498540 KRTAP9-6A8MVA2 160 aa4.16□□□□□ -1.74
TRAF4-212ENST00000498540 KRTAP5-1Q6L8H4 278 aa4.15□□□□□ -1.75
TRAF4-212ENST00000498540 KRTAP23-1A1A580 65 aa4.13□□□□□ -1.75
TRAF4-212ENST00000498540 MIR22HGQ0VDD5 57 aa4.05□□□□□ -1.76
TRAF4-212ENST00000498540 MT3P25713 68 aa4.02□□□□□ -1.77
TRAF4-212ENST00000498540 ATP5EP56381 51 aaPredicted RBP4.02□□□□□ -1.77
TRAF4-212ENST00000498540 K7ERS5 55 aa4.01□□□□□ -1.77
TRAF4-212ENST00000498540 ANAPC13Q9BS18 74 aa4.01□□□□□ -1.77
TRAF4-212ENST00000498540 CCDC179H3BU77 68 aa3.99□□□□□ -1.77
TRAF4-212ENST00000498540 RPS28P62857 69 aaKnown RBP3.83□□□□□ -1.8
TRAF4-212ENST00000498540 TMEM258P61165 79 aa3.79□□□□□ -1.8
TRAF4-212ENST00000498540 LCE1EQ5T753 118 aa3.79□□□□□ -1.8
TRAF4-212ENST00000498540 CDC42SE1Q9NRR8 79 aa3.77□□□□□ -1.81
TRAF4-212ENST00000498540 PSPHP1O15172 72 aa3.76□□□□□ -1.81
TRAF4-212ENST00000498540 Q1T7F1 81 aa3.75□□□□□ -1.81
TRAF4-212ENST00000498540 ROMO1P60602 79 aa3.69□□□□□ -1.82
TRAF4-212ENST00000498540 KRTAP4-2Q9BYR5 136 aa3.66□□□□□ -1.82
TRAF4-212ENST00000498540 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
TRAF4-212ENST00000498540 V9GYY9 64 aa3.62□□□□□ -1.83
TRAF4-212ENST00000498540 A6NED7 52 aa3.58□□□□□ -1.84
TRAF4-212ENST00000498540 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
TRAF4-212ENST00000498540 KRTAP4-12Q9BQ66 201 aa3.47□□□□□ -1.85
TRAF4-212ENST00000498540 KRTAP5-11Q6L8G4 156 aa3.28□□□□□ -1.88
TRAF4-212ENST00000498540 PCP4P48539 62 aa3.27□□□□□ -1.89
TRAF4-212ENST00000498540 LCE1FQ5T754 118 aa3.21□□□□□ -1.9
TRAF4-212ENST00000498540 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.16□□□□□ -1.9
TRAF4-212ENST00000498540 PHGR1C9JFL3 82 aa3.13□□□□□ -1.91
TRAF4-212ENST00000498540 LCE3DQ9BYE3 92 aa3.04□□□□□ -1.92
TRAF4-212ENST00000498540 KRTAP21-2Q3LI59 83 aa2.92□□□□□ -1.94
TRAF4-212ENST00000498540 BRK1Q8WUW1 75 aa2.84□□□□□ -1.95
TRAF4-212ENST00000498540 LCE3EQ5T5B0 92 aa2.79□□□□□ -1.96
TRAF4-212ENST00000498540 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
TRAF4-212ENST00000498540 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
TRAF4-212ENST00000498540 PMAIP1Q13794 54 aa2.66□□□□□ -1.98
TRAF4-212ENST00000498540 PRAC1Q96KF2 57 aa2.62□□□□□ -1.99
TRAF4-212ENST00000498540 PRO0628Q9UI54 55 aa2.62□□□□□ -1.99
TRAF4-212ENST00000498540 SVIPQ8NHG7 77 aa2.55□□□□□ -2
TRAF4-212ENST00000498540 KTN1-AS1Q86SY8 53 aa2.48□□□□□ -2.01
TRAF4-212ENST00000498540 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
TRAF4-212ENST00000498540 LUZP6Q538Z0 58 aa2.19□□□□□ -2.06
TRAF4-212ENST00000498540 PRM1P04553 51 aa1.89□□□□□ -2.11
TRAF4-212ENST00000498540 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
TRAF4-212ENST00000498540 NDUFAF8A1L188 74 aa1.88□□□□□ -2.11
TRAF4-212ENST00000498540 A0A0A0MQY5 61 aa1.69□□□□□ -2.14
TRAF4-212ENST00000498540 H3BS24 57 aa1.68□□□□□ -2.14
TRAF4-212ENST00000498540 INE1O15225 51 aa1.58□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms