RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 KRTAP12-3P60328 96 aa4.3□□□□□ -1.72
CMSS1-208ENST00000496116 LCE4AQ5TA78 99 aa4.3□□□□□ -1.72
CMSS1-208ENST00000496116 LCE5AQ5TCM9 118 aa4.28□□□□□ -1.72
CMSS1-208ENST00000496116 CRCT1Q9UGL9 99 aa4.27□□□□□ -1.73
CMSS1-208ENST00000496116 KRTAP9-7A8MTY7 169 aa4.19□□□□□ -1.74
CMSS1-208ENST00000496116 FSIP2Q5CZC0 6907 aa4.19□□□□□ -1.74
CMSS1-208ENST00000496116 USH2AO75445 5202 aa4.15□□□□□ -1.74
CMSS1-208ENST00000496116 KRTAP19-5Q3LI72 72 aa4.14□□□□□ -1.75
CMSS1-208ENST00000496116 LCE3CQ5T5A8 94 aa4.04□□□□□ -1.76
CMSS1-208ENST00000496116 KMT2DO14686 5537 aa4.03□□□□□ -1.76
CMSS1-208ENST00000496116 KRTAP19-7Q3SYF9 63 aa3.98□□□□□ -1.77
CMSS1-208ENST00000496116 KRTAP19-6Q3LI70 58 aa3.97□□□□□ -1.77
CMSS1-208ENST00000496116 SSPOA2VEC9 5147 aa3.95□□□□□ -1.78
CMSS1-208ENST00000496116 MT1EP04732 61 aa3.89□□□□□ -1.79
CMSS1-208ENST00000496116 MT1LQ93083 61 aa3.88□□□□□ -1.79
CMSS1-208ENST00000496116 INE1O15225 51 aa3.83□□□□□ -1.8
CMSS1-208ENST00000496116 KRTAP9-6A8MVA2 160 aa3.82□□□□□ -1.8
CMSS1-208ENST00000496116 FCGBPQ9Y6R7 5405 aaPredicted RBP3.74□□□□□ -1.81
CMSS1-208ENST00000496116 SYNE2Q8WXH0 6885 aaKnown RBP3.73□□□□□ -1.81
CMSS1-208ENST00000496116 MACF1Q9UPN3 7388 aaKnown RBP3.72□□□□□ -1.81
CMSS1-208ENST00000496116 KRTAP2-3P0C7H8 128 aa3.69□□□□□ -1.82
CMSS1-208ENST00000496116 KRTAP2-4Q9BYR9 128 aa3.69□□□□□ -1.82
CMSS1-208ENST00000496116 KRTAP2-1Q9BYU5 128 aa3.69□□□□□ -1.82
CMSS1-208ENST00000496116 KRTAP19-3Q7Z4W3 81 aa3.68□□□□□ -1.82
CMSS1-208ENST00000496116 MT1GP13640 62 aa3.68□□□□□ -1.82
CMSS1-208ENST00000496116 KRTAP6-3Q3LI67 103 aa3.65□□□□□ -1.83
CMSS1-208ENST00000496116 MT1MQ8N339 61 aa3.65□□□□□ -1.83
CMSS1-208ENST00000496116 KRTAP4-3Q9BYR4 195 aa3.61□□□□□ -1.83
CMSS1-208ENST00000496116 SPRR2FQ96RM1 72 aa3.6□□□□□ -1.83
CMSS1-208ENST00000496116 MUC12Q9UKN1 5478 aa3.58□□□□□ -1.84
CMSS1-208ENST00000496116 NEBP20929 6669 aa3.57□□□□□ -1.84
CMSS1-208ENST00000496116 KRTAP20-1Q3LI63 56 aa3.52□□□□□ -1.85
CMSS1-208ENST00000496116 LCE1FQ5T754 118 aa3.5□□□□□ -1.85
CMSS1-208ENST00000496116 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
CMSS1-208ENST00000496116 KRTAP2-2Q9BYT5 123 aa3.46□□□□□ -1.86
CMSS1-208ENST00000496116 LCE1AQ5T7P2 110 aa3.46□□□□□ -1.86
CMSS1-208ENST00000496116 KRTAP5-9P26371 169 aa3.41□□□□□ -1.86
CMSS1-208ENST00000496116 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
CMSS1-208ENST00000496116 SPRR2EP22531 72 aa3.31□□□□□ -1.88
CMSS1-208ENST00000496116 SPRR2BP35325 72 aa3.31□□□□□ -1.88
CMSS1-208ENST00000496116 SPRR2AP35326 72 aa3.31□□□□□ -1.88
CMSS1-208ENST00000496116 MDN1Q9NU22 5596 aa3.31□□□□□ -1.88
CMSS1-208ENST00000496116 MT3P25713 68 aa3.31□□□□□ -1.88
CMSS1-208ENST00000496116 MT1AP04731 61 aa3.28□□□□□ -1.89
CMSS1-208ENST00000496116 KRTAP6-1Q3LI64 71 aa3.26□□□□□ -1.89
CMSS1-208ENST00000496116 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
CMSS1-208ENST00000496116 KRTAP12-4P60329 112 aa3.23□□□□□ -1.89
CMSS1-208ENST00000496116 SPRR2DP22532 72 aa3.19□□□□□ -1.9
CMSS1-208ENST00000496116 GPR98Q8WXG9 6306 aa3.15□□□□□ -1.91
CMSS1-208ENST00000496116 KRTAP5-11Q6L8G4 156 aa3.11□□□□□ -1.91
CMSS1-208ENST00000496116 SYNE1Q8NF91 8797 aaKnown RBP3.11□□□□□ -1.91
CMSS1-208ENST00000496116 LCE3DQ9BYE3 92 aa3.1□□□□□ -1.91
CMSS1-208ENST00000496116 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
CMSS1-208ENST00000496116 LCE1EQ5T753 118 aa2.99□□□□□ -1.93
CMSS1-208ENST00000496116 KRTAP5-4Q6L8H1 288 aa2.96□□□□□ -1.94
CMSS1-208ENST00000496116 KRTAP6-2Q3LI66 62 aa2.95□□□□□ -1.94
CMSS1-208ENST00000496116 KRTAP5-1Q6L8H4 278 aa2.92□□□□□ -1.94
CMSS1-208ENST00000496116 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
CMSS1-208ENST00000496116 PRM1P04553 51 aa2.83□□□□□ -1.96
CMSS1-208ENST00000496116 MT4P47944 62 aa2.77□□□□□ -1.97
CMSS1-208ENST00000496116 HMCN1Q96RW7 5635 aa2.76□□□□□ -1.97
CMSS1-208ENST00000496116 KRTAP5-10Q6L8G5 202 aa2.75□□□□□ -1.97
CMSS1-208ENST00000496116 OBSCNQ5VST9 7968 aa2.74□□□□□ -1.97
CMSS1-208ENST00000496116 KRTAP20-2Q3LI61 65 aa2.74□□□□□ -1.97
CMSS1-208ENST00000496116 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
CMSS1-208ENST00000496116 KRTAP5-7Q6L8G8 165 aa2.71□□□□□ -1.98
CMSS1-208ENST00000496116 KRTAP5-2Q701N4 177 aa2.7□□□□□ -1.98
CMSS1-208ENST00000496116 AHNAKQ09666 5890 aaKnown RBP2.43□□□□□ -2.02
CMSS1-208ENST00000496116 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
CMSS1-208ENST00000496116 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
CMSS1-208ENST00000496116 LCE1CQ5T751 118 aa2.32□□□□□ -2.04
CMSS1-208ENST00000496116 MUC5BQ9HC84 5762 aaPredicted RBP2.3□□□□□ -2.04
CMSS1-208ENST00000496116 KRTAP5-8O75690 187 aa2.26□□□□□ -2.05
CMSS1-208ENST00000496116 KRTAP21-2Q3LI59 83 aa2.12□□□□□ -2.07
CMSS1-208ENST00000496116 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
CMSS1-208ENST00000496116 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
CMSS1-208ENST00000496116 MUC19Q7Z5P9 8384 aa1.7□□□□□ -2.14
CMSS1-208ENST00000496116 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms