RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 KRTAP19-3Q7Z4W3 81 aa3.92□□□□□ -1.78
NELFE-213ENST00000494956 KRTAP19-5Q3LI72 72 aa3.9□□□□□ -1.79
NELFE-213ENST00000494956 A0A1B0GU69 56 aa3.89□□□□□ -1.79
NELFE-213ENST00000494956 ANAPC13Q9BS18 74 aa3.89□□□□□ -1.79
NELFE-213ENST00000494956 CCDC179H3BU77 68 aa3.87□□□□□ -1.79
NELFE-213ENST00000494956 PRAC1Q96KF2 57 aa3.86□□□□□ -1.79
NELFE-213ENST00000494956 GPR98Q8WXG9 6306 aa3.83□□□□□ -1.8
NELFE-213ENST00000494956 SMIM26A0A096LP01 95 aa3.83□□□□□ -1.8
NELFE-213ENST00000494956 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
NELFE-213ENST00000494956 LCE3AQ5TA76 89 aa3.81□□□□□ -1.8
NELFE-213ENST00000494956 MT1GP13640 62 aa3.8□□□□□ -1.8
NELFE-213ENST00000494956 DSTQ03001 7570 aaKnown RBP3.79□□□□□ -1.8
NELFE-213ENST00000494956 MT1LQ93083 61 aa3.79□□□□□ -1.8
NELFE-213ENST00000494956 MT1MQ8N339 61 aa3.77□□□□□ -1.81
NELFE-213ENST00000494956 KRTAP4-3Q9BYR4 195 aa3.76□□□□□ -1.81
NELFE-213ENST00000494956 NDUFAF8A1L188 74 aa3.75□□□□□ -1.81
NELFE-213ENST00000494956 TNP1P09430 55 aa3.74□□□□□ -1.81
NELFE-213ENST00000494956 PP632Q6XCG6 107 aa3.74□□□□□ -1.81
NELFE-213ENST00000494956 LINC01558Q9Y6Z2 57 aa3.73□□□□□ -1.81
NELFE-213ENST00000494956 PRR15LQ9BU68 103 aa3.72□□□□□ -1.81
NELFE-213ENST00000494956 ATP5EP56381 51 aaPredicted RBP3.71□□□□□ -1.82
NELFE-213ENST00000494956 MT4P47944 62 aa3.68□□□□□ -1.82
NELFE-213ENST00000494956 TMEM258P61165 79 aa3.63□□□□□ -1.83
NELFE-213ENST00000494956 UQCR11O14957 56 aa3.62□□□□□ -1.83
NELFE-213ENST00000494956 KRTAP12-3P60328 96 aa3.62□□□□□ -1.83
NELFE-213ENST00000494956 KRTAP5-4Q6L8H1 288 aa3.59□□□□□ -1.83
NELFE-213ENST00000494956 MIR22HGQ0VDD5 57 aa3.56□□□□□ -1.84
NELFE-213ENST00000494956 PSPHP1O15172 72 aa3.52□□□□□ -1.85
NELFE-213ENST00000494956 HMCN1Q96RW7 5635 aa3.5□□□□□ -1.85
NELFE-213ENST00000494956 KRTAP25-1Q3LHN0 102 aa3.49□□□□□ -1.85
NELFE-213ENST00000494956 LCE1FQ5T754 118 aa3.48□□□□□ -1.85
NELFE-213ENST00000494956 KRTAP5-5Q701N2 237 aaPredicted RBP3.45□□□□□ -1.86
NELFE-213ENST00000494956 KRTAP5-10Q6L8G5 202 aa3.44□□□□□ -1.86
NELFE-213ENST00000494956 K7ERS5 55 aa3.43□□□□□ -1.86
NELFE-213ENST00000494956 Q1T7F1 81 aa3.43□□□□□ -1.86
NELFE-213ENST00000494956 KRTAP20-2Q3LI61 65 aa3.41□□□□□ -1.86
NELFE-213ENST00000494956 V9GYY9 64 aa3.41□□□□□ -1.86
NELFE-213ENST00000494956 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
NELFE-213ENST00000494956 AHNAK2Q8IVF2 5795 aa3.38□□□□□ -1.87
NELFE-213ENST00000494956 A6NED7 52 aa3.35□□□□□ -1.87
NELFE-213ENST00000494956 SPRR5A0A1B0GTR4 108 aa3.34□□□□□ -1.87
NELFE-213ENST00000494956 KRTAP12-4P60329 112 aa3.33□□□□□ -1.88
NELFE-213ENST00000494956 LCE3CQ5T5A8 94 aa3.33□□□□□ -1.88
NELFE-213ENST00000494956 SYNE1Q8NF91 8797 aaKnown RBP3.3□□□□□ -1.88
NELFE-213ENST00000494956 KRTAP5-7Q6L8G8 165 aa3.28□□□□□ -1.88
NELFE-213ENST00000494956 CDC42SE1Q9NRR8 79 aa3.28□□□□□ -1.88
NELFE-213ENST00000494956 ROMO1P60602 79 aa3.24□□□□□ -1.89
NELFE-213ENST00000494956 KRTAP6-1Q3LI64 71 aa3.23□□□□□ -1.89
NELFE-213ENST00000494956 KRTAP9-6A8MVA2 160 aa3.21□□□□□ -1.9
NELFE-213ENST00000494956 MT1AP04731 61 aa3.2□□□□□ -1.9
NELFE-213ENST00000494956 RPS28P62857 69 aaKnown RBP3.18□□□□□ -1.9
NELFE-213ENST00000494956 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
NELFE-213ENST00000494956 KRTAP5-2Q701N4 177 aa3.14□□□□□ -1.91
NELFE-213ENST00000494956 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
NELFE-213ENST00000494956 KRTAP5-8O75690 187 aa3.02□□□□□ -1.93
NELFE-213ENST00000494956 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.01□□□□□ -1.93
NELFE-213ENST00000494956 AHNAKQ09666 5890 aaKnown RBP2.94□□□□□ -1.94
NELFE-213ENST00000494956 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
NELFE-213ENST00000494956 OBSCNQ5VST9 7968 aa2.9□□□□□ -1.95
NELFE-213ENST00000494956 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
NELFE-213ENST00000494956 MUC5ACP98088 5654 aa2.84□□□□□ -1.95
NELFE-213ENST00000494956 BRK1Q8WUW1 75 aa2.83□□□□□ -1.96
NELFE-213ENST00000494956 MUC5BQ9HC84 5762 aaPredicted RBP2.8□□□□□ -1.96
NELFE-213ENST00000494956 PRO0628Q9UI54 55 aa2.69□□□□□ -1.98
NELFE-213ENST00000494956 PMAIP1Q13794 54 aa2.63□□□□□ -1.99
NELFE-213ENST00000494956 LCE1BQ5T7P3 118 aa2.58□□□□□ -2
NELFE-213ENST00000494956 KTN1-AS1Q86SY8 53 aa2.51□□□□□ -2.01
NELFE-213ENST00000494956 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
NELFE-213ENST00000494956 LCE3DQ9BYE3 92 aa2.44□□□□□ -2.02
NELFE-213ENST00000494956 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
NELFE-213ENST00000494956 LUZP6Q538Z0 58 aa2.27□□□□□ -2.05
NELFE-213ENST00000494956 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
NELFE-213ENST00000494956 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
NELFE-213ENST00000494956 MUC19Q7Z5P9 8384 aa1.78□□□□□ -2.12
NELFE-213ENST00000494956 PRM1P04553 51 aa1.69□□□□□ -2.14
NELFE-213ENST00000494956 INE1O15225 51 aa1.63□□□□□ -2.15
NELFE-213ENST00000494956 KRTAP21-1Q3LI58 79 aa1.5□□□□□ -2.17
NELFE-213ENST00000494956 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 6.5 ms