RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 A6NED7 52 aa5.78□□□□□ -1.48
LIME1-209ENST00000494776 RPS28P62857 69 aaKnown RBP5.77□□□□□ -1.49
LIME1-209ENST00000494776 MT1GP13640 62 aa5.73□□□□□ -1.49
LIME1-209ENST00000494776 PP632Q6XCG6 107 aa5.71□□□□□ -1.5
LIME1-209ENST00000494776 KRTAP25-1Q3LHN0 102 aa5.69□□□□□ -1.5
LIME1-209ENST00000494776 MT1LQ93083 61 aa5.68□□□□□ -1.5
LIME1-209ENST00000494776 DSTQ03001 7570 aaKnown RBP5.68□□□□□ -1.5
LIME1-209ENST00000494776 GPR98Q8WXG9 6306 aa5.65□□□□□ -1.5
LIME1-209ENST00000494776 KRTAP12-3P60328 96 aa5.63□□□□□ -1.51
LIME1-209ENST00000494776 MT1MQ8N339 61 aa5.61□□□□□ -1.51
LIME1-209ENST00000494776 CDC42SE1Q9NRR8 79 aa5.56□□□□□ -1.52
LIME1-209ENST00000494776 KRTAP4-9Q9BYQ8 210 aa5.48□□□□□ -1.53
LIME1-209ENST00000494776 KRTAP4-3Q9BYR4 195 aa5.48□□□□□ -1.53
LIME1-209ENST00000494776 KRTAP23-1A1A580 65 aa5.47□□□□□ -1.53
LIME1-209ENST00000494776 ROMO1P60602 79 aa5.46□□□□□ -1.54
LIME1-209ENST00000494776 KRTAP4-7Q9BYR0 210 aa5.41□□□□□ -1.54
LIME1-209ENST00000494776 LCE4AQ5TA78 99 aa5.37□□□□□ -1.55
LIME1-209ENST00000494776 LCE1DQ5T752 114 aa5.35□□□□□ -1.55
LIME1-209ENST00000494776 HMCN1Q96RW7 5635 aa5.35□□□□□ -1.55
LIME1-209ENST00000494776 KRTAP15-1Q3LI76 137 aa5.32□□□□□ -1.56
LIME1-209ENST00000494776 MT4P47944 62 aa5.31□□□□□ -1.56
LIME1-209ENST00000494776 KRTAP19-4Q3LI73 84 aa5.31□□□□□ -1.56
LIME1-209ENST00000494776 AHNAK2Q8IVF2 5795 aa5.24□□□□□ -1.57
LIME1-209ENST00000494776 KRTAP5-4Q6L8H1 288 aa5.22□□□□□ -1.57
LIME1-209ENST00000494776 LCE3CQ5T5A8 94 aa5.19□□□□□ -1.58
LIME1-209ENST00000494776 BRK1Q8WUW1 75 aa5.15□□□□□ -1.59
LIME1-209ENST00000494776 LOC100996750A0A140TA64 210 aa5.12□□□□□ -1.59
LIME1-209ENST00000494776 KRTAP4-6Q9BYQ5 205 aa5.11□□□□□ -1.59
LIME1-209ENST00000494776 KRTAP5-5Q701N2 237 aaPredicted RBP5.1□□□□□ -1.59
LIME1-209ENST00000494776 KRTAP12-4P60329 112 aa5□□□□□ -1.61
LIME1-209ENST00000494776 KRTAP5-10Q6L8G5 202 aa5□□□□□ -1.61
LIME1-209ENST00000494776 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
LIME1-209ENST00000494776 KRTAP20-2Q3LI61 65 aa4.94□□□□□ -1.62
LIME1-209ENST00000494776 KRTAP5-3Q6L8H2 238 aa4.89□□□□□ -1.63
LIME1-209ENST00000494776 SYNE1Q8NF91 8797 aaKnown RBP4.86□□□□□ -1.63
LIME1-209ENST00000494776 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
LIME1-209ENST00000494776 PMAIP1Q13794 54 aa4.84□□□□□ -1.63
LIME1-209ENST00000494776 KRTAP5-7Q6L8G8 165 aa4.84□□□□□ -1.63
LIME1-209ENST00000494776 MT1AP04731 61 aa4.83□□□□□ -1.64
LIME1-209ENST00000494776 KRTAP6-1Q3LI64 71 aa4.8□□□□□ -1.64
LIME1-209ENST00000494776 KRTAP9-4Q9BYQ2 154 aa4.67□□□□□ -1.66
LIME1-209ENST00000494776 PRAC1Q96KF2 57 aa4.61□□□□□ -1.67
LIME1-209ENST00000494776 KRTAP5-2Q701N4 177 aa4.6□□□□□ -1.67
LIME1-209ENST00000494776 PRO0628Q9UI54 55 aa4.57□□□□□ -1.68
LIME1-209ENST00000494776 KRTAP6-2Q3LI66 62 aa4.56□□□□□ -1.68
LIME1-209ENST00000494776 KRTAP4-11Q9BYQ6 195 aa4.54□□□□□ -1.68
LIME1-209ENST00000494776 MT3P25713 68 aa4.44□□□□□ -1.7
LIME1-209ENST00000494776 AHNAKQ09666 5890 aaKnown RBP4.41□□□□□ -1.7
LIME1-209ENST00000494776 KTN1-AS1Q86SY8 53 aa4.36□□□□□ -1.71
LIME1-209ENST00000494776 KRTAP5-8O75690 187 aa4.35□□□□□ -1.71
LIME1-209ENST00000494776 MUC5BQ9HC84 5762 aaPredicted RBP4.34□□□□□ -1.72
LIME1-209ENST00000494776 OBSCNQ5VST9 7968 aa4.33□□□□□ -1.72
LIME1-209ENST00000494776 MUC5ACP98088 5654 aa4.28□□□□□ -1.72
LIME1-209ENST00000494776 KRTAP9-9Q9BYP9 154 aa4.23□□□□□ -1.73
LIME1-209ENST00000494776 SVIPQ8NHG7 77 aa4.22□□□□□ -1.73
LIME1-209ENST00000494776 KRTAP5-1Q6L8H4 278 aa4.1□□□□□ -1.75
LIME1-209ENST00000494776 LCE1EQ5T753 118 aa4.01□□□□□ -1.77
LIME1-209ENST00000494776 LUZP6Q538Z0 58 aa3.93□□□□□ -1.78
LIME1-209ENST00000494776 LCE1BQ5T7P3 118 aa3.81□□□□□ -1.8
LIME1-209ENST00000494776 LCE3DQ9BYE3 92 aa3.79□□□□□ -1.8
LIME1-209ENST00000494776 KRTAP4-2Q9BYR5 136 aa3.75□□□□□ -1.81
LIME1-209ENST00000494776 LCE1CQ5T751 118 aa3.72□□□□□ -1.81
LIME1-209ENST00000494776 LCE3EQ5T5B0 92 aa3.6□□□□□ -1.83
LIME1-209ENST00000494776 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.38□□□□□ -1.87
LIME1-209ENST00000494776 KRTAP4-12Q9BQ66 201 aa3.38□□□□□ -1.87
LIME1-209ENST00000494776 KRTAP5-11Q6L8G4 156 aa3.34□□□□□ -1.87
LIME1-209ENST00000494776 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
LIME1-209ENST00000494776 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
LIME1-209ENST00000494776 KRTAP21-2Q3LI59 83 aa3.13□□□□□ -1.91
LIME1-209ENST00000494776 PHGR1C9JFL3 82 aa2.96□□□□□ -1.94
LIME1-209ENST00000494776 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
LIME1-209ENST00000494776 PRM1P04553 51 aa2.8□□□□□ -1.96
LIME1-209ENST00000494776 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
LIME1-209ENST00000494776 A0A0A0MQY5 61 aa2.67□□□□□ -1.98
LIME1-209ENST00000494776 INE1O15225 51 aa2.64□□□□□ -1.99
LIME1-209ENST00000494776 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
LIME1-209ENST00000494776 H3BS24 57 aa1.97□□□□□ -2.09
LIME1-209ENST00000494776 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 148.8 ms