RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 USH2AO75445 5202 aa4.34□□□□□ -1.71
CHMP3-209ENST00000494623 LCE5AQ5TCM9 118 aa4.26□□□□□ -1.73
CHMP3-209ENST00000494623 INE1O15225 51 aa4.23□□□□□ -1.73
CHMP3-209ENST00000494623 LCE4AQ5TA78 99 aa4.23□□□□□ -1.73
CHMP3-209ENST00000494623 KMT2DO14686 5537 aa4.23□□□□□ -1.73
CHMP3-209ENST00000494623 KRTAP19-5Q3LI72 72 aa4.21□□□□□ -1.74
CHMP3-209ENST00000494623 KRTAP19-4Q3LI73 84 aa4.15□□□□□ -1.75
CHMP3-209ENST00000494623 KRTAP9-7A8MTY7 169 aa4.09□□□□□ -1.75
CHMP3-209ENST00000494623 LCE3CQ5T5A8 94 aa4.09□□□□□ -1.75
CHMP3-209ENST00000494623 SSPOA2VEC9 5147 aa4.04□□□□□ -1.76
CHMP3-209ENST00000494623 FSIP2Q5CZC0 6907 aa4.03□□□□□ -1.76
CHMP3-209ENST00000494623 KRTAP19-7Q3SYF9 63 aa4.02□□□□□ -1.77
CHMP3-209ENST00000494623 HMCN1Q96RW7 5635 aa3.99□□□□□ -1.77
CHMP3-209ENST00000494623 KRTAP9-6A8MVA2 160 aa3.93□□□□□ -1.78
CHMP3-209ENST00000494623 KRTAP19-6Q3LI70 58 aa3.92□□□□□ -1.78
CHMP3-209ENST00000494623 MT1EP04732 61 aa3.92□□□□□ -1.78
CHMP3-209ENST00000494623 MT1LQ93083 61 aa3.9□□□□□ -1.78
CHMP3-209ENST00000494623 FCGBPQ9Y6R7 5405 aaPredicted RBP3.77□□□□□ -1.81
CHMP3-209ENST00000494623 MUC12Q9UKN1 5478 aa3.76□□□□□ -1.81
CHMP3-209ENST00000494623 KRTAP2-3P0C7H8 128 aa3.73□□□□□ -1.81
CHMP3-209ENST00000494623 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
CHMP3-209ENST00000494623 KRTAP2-4Q9BYR9 128 aa3.73□□□□□ -1.81
CHMP3-209ENST00000494623 KRTAP2-1Q9BYU5 128 aa3.73□□□□□ -1.81
CHMP3-209ENST00000494623 KRTAP19-3Q7Z4W3 81 aa3.68□□□□□ -1.82
CHMP3-209ENST00000494623 MT1GP13640 62 aa3.67□□□□□ -1.82
CHMP3-209ENST00000494623 MT1MQ8N339 61 aa3.66□□□□□ -1.82
CHMP3-209ENST00000494623 CRCT1Q9UGL9 99 aa3.62□□□□□ -1.83
CHMP3-209ENST00000494623 SPRR2FQ96RM1 72 aa3.62□□□□□ -1.83
CHMP3-209ENST00000494623 MACF1Q9UPN3 7388 aaKnown RBP3.61□□□□□ -1.83
CHMP3-209ENST00000494623 DSTQ03001 7570 aaKnown RBP3.58□□□□□ -1.84
CHMP3-209ENST00000494623 SYNE2Q8WXH0 6885 aaKnown RBP3.54□□□□□ -1.84
CHMP3-209ENST00000494623 MDN1Q9NU22 5596 aa3.44□□□□□ -1.86
CHMP3-209ENST00000494623 LCE1AQ5T7P2 110 aa3.36□□□□□ -1.87
CHMP3-209ENST00000494623 KRTAP5-9P26371 169 aa3.34□□□□□ -1.88
CHMP3-209ENST00000494623 KRTAP12-4P60329 112 aa3.33□□□□□ -1.88
CHMP3-209ENST00000494623 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.33□□□□□ -1.88
CHMP3-209ENST00000494623 KRTAP6-1Q3LI64 71 aa3.32□□□□□ -1.88
CHMP3-209ENST00000494623 SPRR2EP22531 72 aa3.31□□□□□ -1.88
CHMP3-209ENST00000494623 SPRR2BP35325 72 aa3.31□□□□□ -1.88
CHMP3-209ENST00000494623 SPRR2AP35326 72 aa3.31□□□□□ -1.88
CHMP3-209ENST00000494623 SYNE1Q8NF91 8797 aaKnown RBP3.3□□□□□ -1.88
CHMP3-209ENST00000494623 KRTAP2-2Q9BYT5 123 aa3.28□□□□□ -1.89
CHMP3-209ENST00000494623 MT1AP04731 61 aa3.27□□□□□ -1.89
CHMP3-209ENST00000494623 KRTAP5-5Q701N2 237 aaPredicted RBP3.22□□□□□ -1.89
CHMP3-209ENST00000494623 SPRR2DP22532 72 aa3.17□□□□□ -1.9
CHMP3-209ENST00000494623 LCE3DQ9BYE3 92 aa3.14□□□□□ -1.91
CHMP3-209ENST00000494623 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
CHMP3-209ENST00000494623 KRTAP6-3Q3LI67 103 aa3.11□□□□□ -1.91
CHMP3-209ENST00000494623 LCE3EQ5T5B0 92 aa3.09□□□□□ -1.92
CHMP3-209ENST00000494623 MUC5BQ9HC84 5762 aaPredicted RBP3.04□□□□□ -1.92
CHMP3-209ENST00000494623 KRTAP5-11Q6L8G4 156 aa3.01□□□□□ -1.93
CHMP3-209ENST00000494623 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
CHMP3-209ENST00000494623 OBSCNQ5VST9 7968 aa2.97□□□□□ -1.93
CHMP3-209ENST00000494623 LCE1EQ5T753 118 aa2.97□□□□□ -1.93
CHMP3-209ENST00000494623 MT3P25713 68 aa2.96□□□□□ -1.94
CHMP3-209ENST00000494623 NEBP20929 6669 aa2.93□□□□□ -1.94
CHMP3-209ENST00000494623 PRM1P04553 51 aa2.92□□□□□ -1.94
CHMP3-209ENST00000494623 KRTAP5-4Q6L8H1 288 aa2.87□□□□□ -1.95
CHMP3-209ENST00000494623 MT4P47944 62 aa2.81□□□□□ -1.96
CHMP3-209ENST00000494623 KRTAP5-1Q6L8H4 278 aa2.77□□□□□ -1.97
CHMP3-209ENST00000494623 KRTAP20-2Q3LI61 65 aa2.72□□□□□ -1.97
CHMP3-209ENST00000494623 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
CHMP3-209ENST00000494623 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
CHMP3-209ENST00000494623 KRTAP5-8O75690 187 aa2.6□□□□□ -1.99
CHMP3-209ENST00000494623 KRTAP20-1Q3LI63 56 aa2.58□□□□□ -2
CHMP3-209ENST00000494623 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
CHMP3-209ENST00000494623 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
CHMP3-209ENST00000494623 KRTAP5-10Q6L8G5 202 aa2.29□□□□□ -2.04
CHMP3-209ENST00000494623 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
CHMP3-209ENST00000494623 MUC19Q7Z5P9 8384 aa2.19□□□□□ -2.06
CHMP3-209ENST00000494623 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
CHMP3-209ENST00000494623 AHNAK2Q8IVF2 5795 aa2.13□□□□□ -2.07
CHMP3-209ENST00000494623 KRTAP5-7Q6L8G8 165 aa2.09□□□□□ -2.07
CHMP3-209ENST00000494623 GPR98Q8WXG9 6306 aa2.07□□□□□ -2.08
CHMP3-209ENST00000494623 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
CHMP3-209ENST00000494623 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
CHMP3-209ENST00000494623 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
CHMP3-209ENST00000494623 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 258.3 ms