RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 KRTAP4-3Q9BYR4 195 aa11.53□□□□□ -0.56
CBX4-203ENST00000494546 MIR22HGQ0VDD5 57 aa11.52□□□□□ -0.57
CBX4-203ENST00000494546 KRTAP12-3P60328 96 aa11.46□□□□□ -0.57
CBX4-203ENST00000494546 LCE1DQ5T752 114 aa11.42□□□□□ -0.58
CBX4-203ENST00000494546 LCE4AQ5TA78 99 aa11.41□□□□□ -0.58
CBX4-203ENST00000494546 PSPHP1O15172 72 aa11.33□□□□□ -0.6
CBX4-203ENST00000494546 MT4P47944 62 aa11.33□□□□□ -0.6
CBX4-203ENST00000494546 K7ERS5 55 aa11.32□□□□□ -0.6
CBX4-203ENST00000494546 V9GYY9 64 aa11.32□□□□□ -0.6
CBX4-203ENST00000494546 KRTAP25-1Q3LHN0 102 aa11.3□□□□□ -0.6
CBX4-203ENST00000494546 KRTAP4-7Q9BYR0 210 aa11.28□□□□□ -0.6
CBX4-203ENST00000494546 Q1T7F1 81 aa11.23□□□□□ -0.61
CBX4-203ENST00000494546 GPR98Q8WXG9 6306 aa11.21□□□□□ -0.62
CBX4-203ENST00000494546 KRTAP5-4Q6L8H1 288 aa11.18□□□□□ -0.62
CBX4-203ENST00000494546 HMCN1Q96RW7 5635 aa11.09□□□□□ -0.63
CBX4-203ENST00000494546 KRTAP4-6Q9BYQ5 205 aa10.99□□□□□ -0.65
CBX4-203ENST00000494546 A6NED7 52 aa10.94□□□□□ -0.66
CBX4-203ENST00000494546 KRTAP23-1A1A580 65 aa10.83□□□□□ -0.68
CBX4-203ENST00000494546 KRTAP5-5Q701N2 237 aaPredicted RBP10.77□□□□□ -0.69
CBX4-203ENST00000494546 KRTAP19-4Q3LI73 84 aa10.74□□□□□ -0.69
CBX4-203ENST00000494546 CDC42SE1Q9NRR8 79 aa10.72□□□□□ -0.69
CBX4-203ENST00000494546 KRTAP15-1Q3LI76 137 aa10.71□□□□□ -0.69
CBX4-203ENST00000494546 LOC100996750A0A140TA64 210 aa10.69□□□□□ -0.7
CBX4-203ENST00000494546 AHNAK2Q8IVF2 5795 aa10.67□□□□□ -0.7
CBX4-203ENST00000494546 RPS28P62857 69 aaKnown RBP10.59□□□□□ -0.71
CBX4-203ENST00000494546 KRTAP20-2Q3LI61 65 aa10.58□□□□□ -0.72
CBX4-203ENST00000494546 KRTAP5-10Q6L8G5 202 aa10.57□□□□□ -0.72
CBX4-203ENST00000494546 LCE3CQ5T5A8 94 aa10.55□□□□□ -0.72
CBX4-203ENST00000494546 ROMO1P60602 79 aa10.54□□□□□ -0.72
CBX4-203ENST00000494546 KRTAP12-4P60329 112 aa10.52□□□□□ -0.73
CBX4-203ENST00000494546 SPRR5A0A1B0GTR4 108 aa10.5□□□□□ -0.73
CBX4-203ENST00000494546 PCP4P48539 62 aa10.43□□□□□ -0.74
CBX4-203ENST00000494546 KRTAP5-3Q6L8H2 238 aa10.36□□□□□ -0.75
CBX4-203ENST00000494546 SYNE1Q8NF91 8797 aaKnown RBP10.28□□□□□ -0.76
CBX4-203ENST00000494546 KRTAP5-7Q6L8G8 165 aa10.15□□□□□ -0.78
CBX4-203ENST00000494546 MT1AP04731 61 aa10.06□□□□□ -0.8
CBX4-203ENST00000494546 KRTAP6-1Q3LI64 71 aa10.01□□□□□ -0.81
CBX4-203ENST00000494546 KRTAP9-6A8MVA2 160 aa9.95□□□□□ -0.82
CBX4-203ENST00000494546 KRTAP5-2Q701N4 177 aa9.8□□□□□ -0.84
CBX4-203ENST00000494546 KRTAP9-4Q9BYQ2 154 aa9.72□□□□□ -0.85
CBX4-203ENST00000494546 KRTAP4-11Q9BYQ6 195 aa9.65□□□□□ -0.86
CBX4-203ENST00000494546 KRTAP6-2Q3LI66 62 aa9.57□□□□□ -0.88
CBX4-203ENST00000494546 BRK1Q8WUW1 75 aa9.36□□□□□ -0.91
CBX4-203ENST00000494546 KRTAP5-8O75690 187 aa9.32□□□□□ -0.92
CBX4-203ENST00000494546 MT3P25713 68 aa9.21□□□□□ -0.94
CBX4-203ENST00000494546 OBSCNQ5VST9 7968 aa9.06□□□□□ -0.96
CBX4-203ENST00000494546 KRTAP9-9Q9BYP9 154 aa8.86□□□□□ -0.99
CBX4-203ENST00000494546 KRTAP5-1Q6L8H4 278 aa8.79□□□□□ -1
CBX4-203ENST00000494546 PMAIP1Q13794 54 aa8.77□□□□□ -1.01
CBX4-203ENST00000494546 MUC5ACP98088 5654 aa8.74□□□□□ -1.01
CBX4-203ENST00000494546 MUC5BQ9HC84 5762 aaPredicted RBP8.73□□□□□ -1.01
CBX4-203ENST00000494546 AHNAKQ09666 5890 aaKnown RBP8.7□□□□□ -1.02
CBX4-203ENST00000494546 PRAC1Q96KF2 57 aa8.51□□□□□ -1.05
CBX4-203ENST00000494546 LCE1EQ5T753 118 aa8.41□□□□□ -1.06
CBX4-203ENST00000494546 LCE1BQ5T7P3 118 aa8□□□□□ -1.13
CBX4-203ENST00000494546 PRO0628Q9UI54 55 aa7.99□□□□□ -1.13
CBX4-203ENST00000494546 KRTAP4-2Q9BYR5 136 aa7.97□□□□□ -1.13
CBX4-203ENST00000494546 LCE1CQ5T751 118 aa7.81□□□□□ -1.16
CBX4-203ENST00000494546 KTN1-AS1Q86SY8 53 aa7.7□□□□□ -1.18
CBX4-203ENST00000494546 LCE3DQ9BYE3 92 aa7.61□□□□□ -1.19
CBX4-203ENST00000494546 SVIPQ8NHG7 77 aa7.48□□□□□ -1.21
CBX4-203ENST00000494546 KRTAP4-12Q9BQ66 201 aa7.26□□□□□ -1.25
CBX4-203ENST00000494546 LUZP6Q538Z0 58 aa7.19□□□□□ -1.26
CBX4-203ENST00000494546 LCE3EQ5T5B0 92 aa7.16□□□□□ -1.26
CBX4-203ENST00000494546 KRTAP5-6Q6L8G9 129 aaPredicted RBP7.09□□□□□ -1.27
CBX4-203ENST00000494546 KRTAP5-11Q6L8G4 156 aa7.08□□□□□ -1.28
CBX4-203ENST00000494546 LCE1FQ5T754 118 aa6.87□□□□□ -1.31
CBX4-203ENST00000494546 KRTAP21-2Q3LI59 83 aa6.58□□□□□ -1.36
CBX4-203ENST00000494546 PHGR1C9JFL3 82 aa6.19□□□□□ -1.42
CBX4-203ENST00000494546 KRTAP4-4Q9BYR3 166 aa6.08□□□□□ -1.44
CBX4-203ENST00000494546 NDUFAF8A1L188 74 aa5.64□□□□□ -1.51
CBX4-203ENST00000494546 MUC19Q7Z5P9 8384 aa5.58□□□□□ -1.52
CBX4-203ENST00000494546 PRM1P04553 51 aa5.41□□□□□ -1.54
CBX4-203ENST00000494546 KRTAP21-1Q3LI58 79 aa4.67□□□□□ -1.66
CBX4-203ENST00000494546 INE1O15225 51 aa4.45□□□□□ -1.7
CBX4-203ENST00000494546 A0A0A0MQY5 61 aa4.33□□□□□ -1.72
CBX4-203ENST00000494546 MUC16Q8WXI7 14507 aa3.97□□□□□ -1.77
CBX4-203ENST00000494546 H3BS24 57 aa2.51□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 11.5 ms