RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PP632Q6XCG6 107 aa4.52□□□□□ -1.69
SKA1-205ENST00000494518 SPANXA2-OT1Q8N9U9 137 aa4.52□□□□□ -1.69
SKA1-205ENST00000494518 A0A0A0MQY5 61 aa4.5□□□□□ -1.69
SKA1-205ENST00000494518 MT1LQ93083 61 aa4.48□□□□□ -1.69
SKA1-205ENST00000494518 KRTAP4-3Q9BYR4 195 aa4.48□□□□□ -1.69
SKA1-205ENST00000494518 COA5Q86WW8 74 aa4.47□□□□□ -1.69
SKA1-205ENST00000494518 SERP1Q9Y6X1 66 aa4.46□□□□□ -1.7
SKA1-205ENST00000494518 KRTAP12-1P59990 96 aa4.45□□□□□ -1.7
SKA1-205ENST00000494518 SEC61GP60059 68 aa4.45□□□□□ -1.7
SKA1-205ENST00000494518 KRTAP5-1Q6L8H4 278 aa4.44□□□□□ -1.7
SKA1-205ENST00000494518 A0A1B0GU33 70 aa4.42□□□□□ -1.7
SKA1-205ENST00000494518 KRTAP5-10Q6L8G5 202 aa4.4□□□□□ -1.71
SKA1-205ENST00000494518 KRTAP5-4Q6L8H1 288 aa4.4□□□□□ -1.71
SKA1-205ENST00000494518 LCE3AQ5TA76 89 aa4.39□□□□□ -1.71
SKA1-205ENST00000494518 C10orf95Q9H7T3 257 aa4.39□□□□□ -1.71
SKA1-205ENST00000494518 K7ERU9 68 aa4.38□□□□□ -1.71
SKA1-205ENST00000494518 SERP2Q8N6R1 65 aa4.38□□□□□ -1.71
SKA1-205ENST00000494518 A8MU10 97 aa4.32□□□□□ -1.72
SKA1-205ENST00000494518 KRTAP4-4Q9BYR3 166 aa4.29□□□□□ -1.72
SKA1-205ENST00000494518 TNP1P09430 55 aa4.28□□□□□ -1.72
SKA1-205ENST00000494518 SMIM26A0A096LP01 95 aa4.27□□□□□ -1.73
SKA1-205ENST00000494518 KRTAP5-7Q6L8G8 165 aa4.24□□□□□ -1.73
SKA1-205ENST00000494518 A0A1B0GU69 56 aa4.23□□□□□ -1.73
SKA1-205ENST00000494518 KRTAP20-2Q3LI61 65 aa4.21□□□□□ -1.74
SKA1-205ENST00000494518 H7BZZ5 65 aa4.19□□□□□ -1.74
SKA1-205ENST00000494518 KRTAP12-3P60328 96 aa4.19□□□□□ -1.74
SKA1-205ENST00000494518 COX7CP15954 63 aa4.18□□□□□ -1.74
SKA1-205ENST00000494518 KRTAP5-5Q701N2 237 aaPredicted RBP4.14□□□□□ -1.75
SKA1-205ENST00000494518 SPRR5A0A1B0GTR4 108 aa4.12□□□□□ -1.75
SKA1-205ENST00000494518 KRTAP12-4P60329 112 aa4.08□□□□□ -1.76
SKA1-205ENST00000494518 SYNE1Q8NF91 8797 aaKnown RBP4.07□□□□□ -1.76
SKA1-205ENST00000494518 PRR15LQ9BU68 103 aa4.01□□□□□ -1.77
SKA1-205ENST00000494518 LCE1FQ5T754 118 aa3.99□□□□□ -1.77
SKA1-205ENST00000494518 LINC01558Q9Y6Z2 57 aa3.92□□□□□ -1.78
SKA1-205ENST00000494518 ANAPC13Q9BS18 74 aa3.91□□□□□ -1.78
SKA1-205ENST00000494518 KRTAP25-1Q3LHN0 102 aa3.9□□□□□ -1.79
SKA1-205ENST00000494518 CCDC179H3BU77 68 aa3.89□□□□□ -1.79
SKA1-205ENST00000494518 KRTAP9-6A8MVA2 160 aa3.88□□□□□ -1.79
SKA1-205ENST00000494518 UQCR11O14957 56 aa3.87□□□□□ -1.79
SKA1-205ENST00000494518 NDUFAF8A1L188 74 aa3.85□□□□□ -1.79
SKA1-205ENST00000494518 ATP5EP56381 51 aaPredicted RBP3.83□□□□□ -1.8
SKA1-205ENST00000494518 KRTAP6-1Q3LI64 71 aa3.82□□□□□ -1.8
SKA1-205ENST00000494518 LCE3CQ5T5A8 94 aa3.82□□□□□ -1.8
SKA1-205ENST00000494518 KRTAP5-2Q701N4 177 aa3.82□□□□□ -1.8
SKA1-205ENST00000494518 MT1AP04731 61 aa3.79□□□□□ -1.8
SKA1-205ENST00000494518 MIR22HGQ0VDD5 57 aa3.79□□□□□ -1.8
SKA1-205ENST00000494518 OBSCNQ5VST9 7968 aa3.78□□□□□ -1.8
SKA1-205ENST00000494518 AHNAKQ09666 5890 aaKnown RBP3.78□□□□□ -1.8
SKA1-205ENST00000494518 MUC5BQ9HC84 5762 aaPredicted RBP3.78□□□□□ -1.8
SKA1-205ENST00000494518 V9GYY9 64 aa3.77□□□□□ -1.81
SKA1-205ENST00000494518 KRTAP5-8O75690 187 aa3.76□□□□□ -1.81
SKA1-205ENST00000494518 MUC5ACP98088 5654 aa3.74□□□□□ -1.81
SKA1-205ENST00000494518 K7ERS5 55 aa3.73□□□□□ -1.81
SKA1-205ENST00000494518 PRAC1Q96KF2 57 aa3.73□□□□□ -1.81
SKA1-205ENST00000494518 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
SKA1-205ENST00000494518 TMEM258P61165 79 aa3.66□□□□□ -1.82
SKA1-205ENST00000494518 PSPHP1O15172 72 aa3.62□□□□□ -1.83
SKA1-205ENST00000494518 PRO0628Q9UI54 55 aa3.61□□□□□ -1.83
SKA1-205ENST00000494518 RPS28P62857 69 aaKnown RBP3.53□□□□□ -1.84
SKA1-205ENST00000494518 CDC42SE1Q9NRR8 79 aa3.52□□□□□ -1.85
SKA1-205ENST00000494518 Q1T7F1 81 aa3.5□□□□□ -1.85
SKA1-205ENST00000494518 A6NED7 52 aa3.46□□□□□ -1.86
SKA1-205ENST00000494518 ROMO1P60602 79 aa3.45□□□□□ -1.86
SKA1-205ENST00000494518 PMAIP1Q13794 54 aa3.42□□□□□ -1.86
SKA1-205ENST00000494518 LCE3EQ5T5B0 92 aa3.42□□□□□ -1.86
SKA1-205ENST00000494518 KTN1-AS1Q86SY8 53 aa3.23□□□□□ -1.89
SKA1-205ENST00000494518 BRK1Q8WUW1 75 aa3.14□□□□□ -1.91
SKA1-205ENST00000494518 LCE1BQ5T7P3 118 aa3.13□□□□□ -1.91
SKA1-205ENST00000494518 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
SKA1-205ENST00000494518 LUZP6Q538Z0 58 aa2.91□□□□□ -1.94
SKA1-205ENST00000494518 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
SKA1-205ENST00000494518 PHGR1C9JFL3 82 aa2.6□□□□□ -1.99
SKA1-205ENST00000494518 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
SKA1-205ENST00000494518 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
SKA1-205ENST00000494518 INE1O15225 51 aa2.38□□□□□ -2.03
SKA1-205ENST00000494518 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
SKA1-205ENST00000494518 PRM1P04553 51 aa1.79□□□□□ -2.12
SKA1-205ENST00000494518 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 29.9 ms