RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 KTN1-AS1Q86SY8 53 aa7.03□□□□□ -1.28
USP39-218ENST00000493829 MDN1Q9NU22 5596 aa7□□□□□ -1.29
USP39-218ENST00000493829 LCE1AQ5T7P2 110 aa6.99□□□□□ -1.29
USP39-218ENST00000493829 MT1LQ93083 61 aa6.93□□□□□ -1.3
USP39-218ENST00000493829 NEBP20929 6669 aa6.93□□□□□ -1.3
USP39-218ENST00000493829 KRTAP19-3Q7Z4W3 81 aa6.91□□□□□ -1.3
USP39-218ENST00000493829 KRTAP15-1Q3LI76 137 aa6.85□□□□□ -1.31
USP39-218ENST00000493829 LCE5AQ5TCM9 118 aa6.82□□□□□ -1.32
USP39-218ENST00000493829 MT1GP13640 62 aa6.78□□□□□ -1.32
USP39-218ENST00000493829 SPRR2DP22532 72 aa6.78□□□□□ -1.32
USP39-218ENST00000493829 SVIPQ8NHG7 77 aa6.75□□□□□ -1.33
USP39-218ENST00000493829 MT1MQ8N339 61 aa6.74□□□□□ -1.33
USP39-218ENST00000493829 KRTAP4-7Q9BYR0 210 aa6.71□□□□□ -1.34
USP39-218ENST00000493829 KRTAP4-3Q9BYR4 195 aa6.65□□□□□ -1.35
USP39-218ENST00000493829 LCE3CQ5T5A8 94 aa6.61□□□□□ -1.35
USP39-218ENST00000493829 KRTAP19-4Q3LI73 84 aa6.55□□□□□ -1.36
USP39-218ENST00000493829 LCE3BQ5TA77 95 aa6.52□□□□□ -1.37
USP39-218ENST00000493829 KRTAP20-1Q3LI63 56 aa6.52□□□□□ -1.37
USP39-218ENST00000493829 DSTQ03001 7570 aaKnown RBP6.48□□□□□ -1.37
USP39-218ENST00000493829 KRTAP2-3P0C7H8 128 aa6.47□□□□□ -1.37
USP39-218ENST00000493829 KRTAP2-4Q9BYR9 128 aa6.47□□□□□ -1.37
USP39-218ENST00000493829 LOC100996750A0A140TA64 210 aa6.32□□□□□ -1.4
USP39-218ENST00000493829 KRTAP2-2Q9BYT5 123 aa6.31□□□□□ -1.4
USP39-218ENST00000493829 KRTAP2-1Q9BYU5 128 aa6.31□□□□□ -1.4
USP39-218ENST00000493829 KRTAP9-6A8MVA2 160 aa6.26□□□□□ -1.41
USP39-218ENST00000493829 SPRR5A0A1B0GTR4 108 aa6.16□□□□□ -1.42
USP39-218ENST00000493829 KRTAP5-5Q701N2 237 aaPredicted RBP6.08□□□□□ -1.44
USP39-218ENST00000493829 KRTAP5-4Q6L8H1 288 aa5.97□□□□□ -1.45
USP39-218ENST00000493829 KRTAP4-9Q9BYQ8 210 aa5.95□□□□□ -1.46
USP39-218ENST00000493829 LCE4AQ5TA78 99 aa5.94□□□□□ -1.46
USP39-218ENST00000493829 MT4P47944 62 aa5.93□□□□□ -1.46
USP39-218ENST00000493829 MT1AP04731 61 aa5.88□□□□□ -1.47
USP39-218ENST00000493829 KRTAP6-1Q3LI64 71 aa5.85□□□□□ -1.47
USP39-218ENST00000493829 LCE1DQ5T752 114 aa5.85□□□□□ -1.47
USP39-218ENST00000493829 LUZP6Q538Z0 58 aa5.8□□□□□ -1.48
USP39-218ENST00000493829 KRTAP4-6Q9BYQ5 205 aa5.79□□□□□ -1.48
USP39-218ENST00000493829 KRTAP12-4P60329 112 aa5.75□□□□□ -1.49
USP39-218ENST00000493829 SYNE1Q8NF91 8797 aaKnown RBP5.73□□□□□ -1.49
USP39-218ENST00000493829 HMCN1Q96RW7 5635 aa5.72□□□□□ -1.49
USP39-218ENST00000493829 KRTAP20-2Q3LI61 65 aa5.64□□□□□ -1.51
USP39-218ENST00000493829 KRTAP9-4Q9BYQ2 154 aa5.6□□□□□ -1.51
USP39-218ENST00000493829 KRTAP6-2Q3LI66 62 aa5.47□□□□□ -1.53
USP39-218ENST00000493829 NDUFAF8A1L188 74 aa5.43□□□□□ -1.54
USP39-218ENST00000493829 KRTAP5-3Q6L8H2 238 aa5.42□□□□□ -1.54
USP39-218ENST00000493829 KRTAP5-2Q701N4 177 aa5.35□□□□□ -1.55
USP39-218ENST00000493829 MT3P25713 68 aa5.33□□□□□ -1.56
USP39-218ENST00000493829 AHNAK2Q8IVF2 5795 aa5.23□□□□□ -1.57
USP39-218ENST00000493829 GPR98Q8WXG9 6306 aa5.09□□□□□ -1.6
USP39-218ENST00000493829 KRTAP5-10Q6L8G5 202 aa5.04□□□□□ -1.6
USP39-218ENST00000493829 KRTAP4-11Q9BYQ6 195 aa4.97□□□□□ -1.61
USP39-218ENST00000493829 OBSCNQ5VST9 7968 aa4.96□□□□□ -1.61
USP39-218ENST00000493829 LCE3DQ9BYE3 92 aa4.89□□□□□ -1.63
USP39-218ENST00000493829 KRTAP5-8O75690 187 aa4.79□□□□□ -1.64
USP39-218ENST00000493829 KRTAP5-7Q6L8G8 165 aa4.72□□□□□ -1.65
USP39-218ENST00000493829 LCE3EQ5T5B0 92 aa4.71□□□□□ -1.66
USP39-218ENST00000493829 KRTAP5-1Q6L8H4 278 aa4.69□□□□□ -1.66
USP39-218ENST00000493829 LCE1EQ5T753 118 aa4.67□□□□□ -1.66
USP39-218ENST00000493829 A0A0A0MQY5 61 aa4.61□□□□□ -1.67
USP39-218ENST00000493829 MUC5ACP98088 5654 aa4.5□□□□□ -1.69
USP39-218ENST00000493829 LCE1BQ5T7P3 118 aa4.5□□□□□ -1.69
USP39-218ENST00000493829 KRTAP4-2Q9BYR5 136 aa4.42□□□□□ -1.7
USP39-218ENST00000493829 KRTAP9-9Q9BYP9 154 aa4.41□□□□□ -1.7
USP39-218ENST00000493829 INE1O15225 51 aa4.38□□□□□ -1.71
USP39-218ENST00000493829 LCE1CQ5T751 118 aa4.36□□□□□ -1.71
USP39-218ENST00000493829 H3BS24 57 aa4.22□□□□□ -1.73
USP39-218ENST00000493829 MUC5BQ9HC84 5762 aaPredicted RBP4.18□□□□□ -1.74
USP39-218ENST00000493829 AHNAKQ09666 5890 aaKnown RBP4.07□□□□□ -1.76
USP39-218ENST00000493829 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.03□□□□□ -1.76
USP39-218ENST00000493829 PRM1P04553 51 aa3.98□□□□□ -1.77
USP39-218ENST00000493829 KRTAP5-11Q6L8G4 156 aa3.9□□□□□ -1.79
USP39-218ENST00000493829 KRTAP4-12Q9BQ66 201 aa3.85□□□□□ -1.79
USP39-218ENST00000493829 KRTAP21-2Q3LI59 83 aa3.81□□□□□ -1.8
USP39-218ENST00000493829 LCE1FQ5T754 118 aa3.57□□□□□ -1.84
USP39-218ENST00000493829 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
USP39-218ENST00000493829 PHGR1C9JFL3 82 aa3.36□□□□□ -1.87
USP39-218ENST00000493829 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
USP39-218ENST00000493829 KRTAP21-1Q3LI58 79 aa2.31□□□□□ -2.04
USP39-218ENST00000493829 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 192.4 ms