RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 KRTAP9-6A0A140TA67 174 aa2.3□□□□□ -2.04
VPS13B-205ENST00000493587 FSIP2Q5CZC0 6907 aa2.29□□□□□ -2.04
VPS13B-205ENST00000493587 KRTAP4-8A0A0G2JLE6 195 aa2.29□□□□□ -2.04
VPS13B-205ENST00000493587 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.29□□□□□ -2.04
VPS13B-205ENST00000493587 KRTAP19-6Q3LI70 58 aa2.28□□□□□ -2.04
VPS13B-205ENST00000493587 KRTAP4-7Q9BYR0 210 aa2.28□□□□□ -2.04
VPS13B-205ENST00000493587 KRTAP19-7Q3SYF9 63 aa2.27□□□□□ -2.05
VPS13B-205ENST00000493587 LCE1AQ5T7P2 110 aa2.27□□□□□ -2.05
VPS13B-205ENST00000493587 FCGBPQ9Y6R7 5405 aaPredicted RBP2.26□□□□□ -2.05
VPS13B-205ENST00000493587 LCE3BQ5TA77 95 aa2.25□□□□□ -2.05
VPS13B-205ENST00000493587 SYNE1Q8NF91 8797 aaKnown RBP2.24□□□□□ -2.05
VPS13B-205ENST00000493587 CRCT1Q9UGL9 99 aa2.23□□□□□ -2.05
VPS13B-205ENST00000493587 KRTAP2-2Q9BYT5 123 aa2.23□□□□□ -2.05
VPS13B-205ENST00000493587 KRTAP9-9Q9BYP9 154 aa2.22□□□□□ -2.05
VPS13B-205ENST00000493587 KRTAP9-4Q9BYQ2 154 aa2.22□□□□□ -2.05
VPS13B-205ENST00000493587 KRTAP6-3Q3LI67 103 aa2.21□□□□□ -2.06
VPS13B-205ENST00000493587 LCE1DQ5T752 114 aa2.21□□□□□ -2.06
VPS13B-205ENST00000493587 OBSCNQ5VST9 7968 aa2.21□□□□□ -2.06
VPS13B-205ENST00000493587 PRM1P04553 51 aa2.21□□□□□ -2.06
VPS13B-205ENST00000493587 LCE1EQ5T753 118 aa2.21□□□□□ -2.06
VPS13B-205ENST00000493587 KRTAP4-9Q9BYQ8 210 aa2.2□□□□□ -2.06
VPS13B-205ENST00000493587 KRTAP19-4Q3LI73 84 aa2.18□□□□□ -2.06
VPS13B-205ENST00000493587 KRTAP5-3Q6L8H2 238 aa2.17□□□□□ -2.06
VPS13B-205ENST00000493587 MT1EP04732 61 aa2.16□□□□□ -2.06
VPS13B-205ENST00000493587 MACF1Q9UPN3 7388 aaKnown RBP2.14□□□□□ -2.07
VPS13B-205ENST00000493587 MT1LQ93083 61 aa2.14□□□□□ -2.07
VPS13B-205ENST00000493587 KRTAP9-7A8MTY7 169 aa2.13□□□□□ -2.07
VPS13B-205ENST00000493587 MUC12Q9UKN1 5478 aa2.13□□□□□ -2.07
VPS13B-205ENST00000493587 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.07
VPS13B-205ENST00000493587 SYNE2Q8WXH0 6885 aaKnown RBP2.09□□□□□ -2.08
VPS13B-205ENST00000493587 MT1GP13640 62 aa2.07□□□□□ -2.08
VPS13B-205ENST00000493587 LCE3EQ5T5B0 92 aa2.05□□□□□ -2.08
VPS13B-205ENST00000493587 KRTAP4-11Q9BYQ6 195 aa2.05□□□□□ -2.08
VPS13B-205ENST00000493587 LCE3DQ9BYE3 92 aa2.04□□□□□ -2.08
VPS13B-205ENST00000493587 LCE5AQ5TCM9 118 aa2.04□□□□□ -2.08
VPS13B-205ENST00000493587 MDN1Q9NU22 5596 aa2.04□□□□□ -2.08
VPS13B-205ENST00000493587 KRTAP5-9P26371 169 aa2.03□□□□□ -2.08
VPS13B-205ENST00000493587 KRTAP4-3Q9BYR4 195 aa2.01□□□□□ -2.09
VPS13B-205ENST00000493587 KRTAP19-3Q7Z4W3 81 aa2.01□□□□□ -2.09
VPS13B-205ENST00000493587 KRTAP5-5Q701N2 237 aaPredicted RBP2□□□□□ -2.09
VPS13B-205ENST00000493587 MT1MQ8N339 61 aa2□□□□□ -2.09
VPS13B-205ENST00000493587 LCE1FQ5T754 118 aa1.96□□□□□ -2.1
VPS13B-205ENST00000493587 SPRR2FQ96RM1 72 aa1.96□□□□□ -2.1
VPS13B-205ENST00000493587 DSTQ03001 7570 aaKnown RBP1.93□□□□□ -2.1
VPS13B-205ENST00000493587 KRTAP6-2Q3LI66 62 aa1.93□□□□□ -2.1
VPS13B-205ENST00000493587 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
VPS13B-205ENST00000493587 MUC5BQ9HC84 5762 aaPredicted RBP1.91□□□□□ -2.1
VPS13B-205ENST00000493587 MT1AP04731 61 aa1.88□□□□□ -2.11
VPS13B-205ENST00000493587 SPRR2EP22531 72 aa1.83□□□□□ -2.12
VPS13B-205ENST00000493587 SPRR2BP35325 72 aa1.83□□□□□ -2.12
VPS13B-205ENST00000493587 SPRR2AP35326 72 aa1.83□□□□□ -2.12
VPS13B-205ENST00000493587 NEBP20929 6669 aa1.82□□□□□ -2.12
VPS13B-205ENST00000493587 KRTAP5-4Q6L8H1 288 aa1.8□□□□□ -2.12
VPS13B-205ENST00000493587 KRTAP6-1Q3LI64 71 aa1.79□□□□□ -2.12
VPS13B-205ENST00000493587 LCE4AQ5TA78 99 aa1.76□□□□□ -2.13
VPS13B-205ENST00000493587 SPRR2DP22532 72 aa1.75□□□□□ -2.13
VPS13B-205ENST00000493587 KRTAP20-1Q3LI63 56 aa1.71□□□□□ -2.14
VPS13B-205ENST00000493587 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
VPS13B-205ENST00000493587 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.64□□□□□ -2.15
VPS13B-205ENST00000493587 GPR98Q8WXG9 6306 aa1.59□□□□□ -2.16
VPS13B-205ENST00000493587 MT3P25713 68 aa1.58□□□□□ -2.16
VPS13B-205ENST00000493587 KRTAP20-2Q3LI61 65 aa1.57□□□□□ -2.16
VPS13B-205ENST00000493587 MT4P47944 62 aa1.53□□□□□ -2.16
VPS13B-205ENST00000493587 KRTAP5-8O75690 187 aa1.47□□□□□ -2.17
VPS13B-205ENST00000493587 KRTAP5-10Q6L8G5 202 aa1.46□□□□□ -2.18
VPS13B-205ENST00000493587 LCE1CQ5T751 118 aa1.46□□□□□ -2.18
VPS13B-205ENST00000493587 LCE1BQ5T7P3 118 aa1.46□□□□□ -2.18
VPS13B-205ENST00000493587 KRTAP5-1Q6L8H4 278 aa1.43□□□□□ -2.18
VPS13B-205ENST00000493587 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
VPS13B-205ENST00000493587 MUC5ACP98088 5654 aa1.38□□□□□ -2.19
VPS13B-205ENST00000493587 AHNAK2Q8IVF2 5795 aa1.35□□□□□ -2.19
VPS13B-205ENST00000493587 KRTAP5-11Q6L8G4 156 aa1.3□□□□□ -2.2
VPS13B-205ENST00000493587 KRTAP21-1Q3LI58 79 aa1.29□□□□□ -2.2
VPS13B-205ENST00000493587 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
VPS13B-205ENST00000493587 KRTAP4-4Q9BYR3 166 aa1.19□□□□□ -2.22
VPS13B-205ENST00000493587 AHNAKQ09666 5890 aaKnown RBP1.17□□□□□ -2.22
VPS13B-205ENST00000493587 PHGR1C9JFL3 82 aa1.02□□□□□ -2.25
VPS13B-205ENST00000493587 MUC16Q8WXI7 14507 aa0.77□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 46.3 ms