RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SPINK1P00995 79 aa1.14□□□□□ -2.23
VPS13A-212ENST00000493341 NREPQ16612 68 aa1.14□□□□□ -2.23
VPS13A-212ENST00000493341 ETDCA0A1B0GVM5 59 aa1.13□□□□□ -2.23
VPS13A-212ENST00000493341 LINC00308Q8TCZ7 52 aa1.13□□□□□ -2.23
VPS13A-212ENST00000493341 SYNE2Q8WXH0 6885 aaKnown RBP1.13□□□□□ -2.23
VPS13A-212ENST00000493341 IGLV5-48A0A075B6I7 105 aa1.12□□□□□ -2.23
VPS13A-212ENST00000493341 COX7BP24311 80 aa1.11□□□□□ -2.23
VPS13A-212ENST00000493341 KRTAP4-1Q9BYQ7 146 aa1.1□□□□□ -2.23
VPS13A-212ENST00000493341 MUC5ACP98088 5654 aa1.1□□□□□ -2.23
VPS13A-212ENST00000493341 FAT4Q6V0I7 4981 aa1.1□□□□□ -2.23
VPS13A-212ENST00000493341 H0Y9P7 68 aa1.1□□□□□ -2.23
VPS13A-212ENST00000493341 KRTAP19-2Q3LHN2 52 aa1.1□□□□□ -2.23
VPS13A-212ENST00000493341 FLGP20930 4061 aaPredicted RBP1.09□□□□□ -2.24
VPS13A-212ENST00000493341 UBL5Q9BZL1 73 aa1.08□□□□□ -2.24
VPS13A-212ENST00000493341 MUC2Q02817 5179 aa1.08□□□□□ -2.24
VPS13A-212ENST00000493341 H0YGX0 51 aa1.07□□□□□ -2.24
VPS13A-212ENST00000493341 MT1HP80294 61 aa1.06□□□□□ -2.24
VPS13A-212ENST00000493341 DEFB105AQ8NG35 78 aa1.06□□□□□ -2.24
VPS13A-212ENST00000493341 NDUFB1O75438 58 aa1.06□□□□□ -2.24
VPS13A-212ENST00000493341 C9orf92A6NGG3 77 aa1.05□□□□□ -2.24
VPS13A-212ENST00000493341 A0A1B0GU69 56 aa1.04□□□□□ -2.24
VPS13A-212ENST00000493341 KRTAP19-3Q7Z4W3 81 aa1.04□□□□□ -2.24
VPS13A-212ENST00000493341 CRIPTQ9P021 101 aa1.04□□□□□ -2.24
VPS13A-212ENST00000493341 TP53AIP1Q9HCN2 124 aa1.01□□□□□ -2.25
VPS13A-212ENST00000493341 COX6B2Q6YFQ2 88 aa1.01□□□□□ -2.25
VPS13A-212ENST00000493341 MT2AP02795 61 aa0.99□□□□□ -2.25
VPS13A-212ENST00000493341 FCGBPQ9Y6R7 5405 aaPredicted RBP0.99□□□□□ -2.25
VPS13A-212ENST00000493341 M0R2T5 61 aa0.99□□□□□ -2.25
VPS13A-212ENST00000493341 MT1FP04733 61 aa0.98□□□□□ -2.25
VPS13A-212ENST00000493341 WFDC13Q8IUB5 93 aa0.98□□□□□ -2.25
VPS13A-212ENST00000493341 MMP24-AS1A0A0U1RRL7 71 aa0.98□□□□□ -2.25
VPS13A-212ENST00000493341 MRPL34Q9BQ48 92 aaKnown RBP0.97□□□□□ -2.25
VPS13A-212ENST00000493341 USH2AO75445 5202 aa0.97□□□□□ -2.25
VPS13A-212ENST00000493341 SSPOA2VEC9 5147 aa0.97□□□□□ -2.25
VPS13A-212ENST00000493341 KRTAP19-6Q3LI70 58 aa0.96□□□□□ -2.26
VPS13A-212ENST00000493341 H1FX-AS1Q4G0G2 97 aa0.96□□□□□ -2.26
VPS13A-212ENST00000493341 FSIP2Q5CZC0 6907 aa0.96□□□□□ -2.26
VPS13A-212ENST00000493341 K7EQZ3 153 aa0.95□□□□□ -2.26
VPS13A-212ENST00000493341 NEBP20929 6669 aa0.94□□□□□ -2.26
VPS13A-212ENST00000493341 KRTAP20-1Q3LI63 56 aa0.94□□□□□ -2.26
VPS13A-212ENST00000493341 H0YAA0 97 aa0.93□□□□□ -2.26
VPS13A-212ENST00000493341 KRTAP19-8Q3LI54 63 aa0.93□□□□□ -2.26
VPS13A-212ENST00000493341 SPRR2GQ9BYE4 73 aa0.93□□□□□ -2.26
VPS13A-212ENST00000493341 MT1BP07438 61 aa0.91□□□□□ -2.26
VPS13A-212ENST00000493341 S4R3F8 94 aa0.91□□□□□ -2.26
VPS13A-212ENST00000493341 KRTAP2-3P0C7H8 128 aa0.9□□□□□ -2.27
VPS13A-212ENST00000493341 KRTAP2-4Q9BYR9 128 aa0.9□□□□□ -2.27
VPS13A-212ENST00000493341 KRTAP2-1Q9BYU5 128 aa0.9□□□□□ -2.27
VPS13A-212ENST00000493341 MT1XP80297 61 aa0.85□□□□□ -2.27
VPS13A-212ENST00000493341 M0QZ58 72 aa0.81□□□□□ -2.28
VPS13A-212ENST00000493341 MUC12Q9UKN1 5478 aa0.81□□□□□ -2.28
VPS13A-212ENST00000493341 KRTAP8-1Q8IUC2 63 aa0.81□□□□□ -2.28
VPS13A-212ENST00000493341 SPRR2FQ96RM1 72 aa0.81□□□□□ -2.28
VPS13A-212ENST00000493341 KMT2DO14686 5537 aa0.8□□□□□ -2.28
VPS13A-212ENST00000493341 MDN1Q9NU22 5596 aa0.8□□□□□ -2.28
VPS13A-212ENST00000493341 SPRR2EP22531 72 aa0.8□□□□□ -2.28
VPS13A-212ENST00000493341 SPRR2BP35325 72 aa0.8□□□□□ -2.28
VPS13A-212ENST00000493341 SPRR2AP35326 72 aa0.8□□□□□ -2.28
VPS13A-212ENST00000493341 SPRR2DP22532 72 aa0.77□□□□□ -2.29
VPS13A-212ENST00000493341 KRTAP19-7Q3SYF9 63 aa0.76□□□□□ -2.29
VPS13A-212ENST00000493341 KRTAP5-10Q6L8G5 202 aa0.76□□□□□ -2.29
VPS13A-212ENST00000493341 MT1EP04732 61 aa0.76□□□□□ -2.29
VPS13A-212ENST00000493341 MT1GP13640 62 aa0.74□□□□□ -2.29
VPS13A-212ENST00000493341 KRTAP19-5Q3LI72 72 aa0.72□□□□□ -2.29
VPS13A-212ENST00000493341 MT1MQ8N339 61 aa0.72□□□□□ -2.29
VPS13A-212ENST00000493341 MT1LQ93083 61 aa0.72□□□□□ -2.29
VPS13A-212ENST00000493341 TNP1P09430 55 aa0.7□□□□□ -2.3
VPS13A-212ENST00000493341 SYNE1Q8NF91 8797 aaKnown RBP0.69□□□□□ -2.3
VPS13A-212ENST00000493341 KRTAP21-1Q3LI58 79 aa0.69□□□□□ -2.3
VPS13A-212ENST00000493341 DSTQ03001 7570 aaKnown RBP0.68□□□□□ -2.3
VPS13A-212ENST00000493341 MT4P47944 62 aa0.65□□□□□ -2.3
VPS13A-212ENST00000493341 KRTAP20-2Q3LI61 65 aa0.65□□□□□ -2.3
VPS13A-212ENST00000493341 MUC16Q8WXI7 14507 aa0.65□□□□□ -2.3
VPS13A-212ENST00000493341 MT1AP04731 61 aa0.62□□□□□ -2.31
VPS13A-212ENST00000493341 KRTAP6-1Q3LI64 71 aa0.6□□□□□ -2.31
VPS13A-212ENST00000493341 KRTAP6-2Q3LI66 62 aa0.57□□□□□ -2.32
VPS13A-212ENST00000493341 PRM1P04553 51 aa0.55□□□□□ -2.32
VPS13A-212ENST00000493341 PHGR1C9JFL3 82 aa0.48□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 166 ms