RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 LCE1DQ5T752 114 aa2.87□□□□□ -1.95
HERC4-211ENST00000492996 KRTAP4-9Q9BYQ8 210 aa2.87□□□□□ -1.95
HERC4-211ENST00000492996 SPRR5A0A1B0GTR4 108 aa2.86□□□□□ -1.95
HERC4-211ENST00000492996 KRTAP4-12Q9BQ66 201 aa2.86□□□□□ -1.95
HERC4-211ENST00000492996 KRTAP10-12P60413 245 aa2.84□□□□□ -1.96
HERC4-211ENST00000492996 KRTAP20-1Q3LI63 56 aa2.83□□□□□ -1.96
HERC4-211ENST00000492996 LCE3AQ5TA76 89 aa2.83□□□□□ -1.96
HERC4-211ENST00000492996 KRTAP4-2Q9BYR5 136 aa2.82□□□□□ -1.96
HERC4-211ENST00000492996 MT1XP80297 61 aa2.81□□□□□ -1.96
HERC4-211ENST00000492996 LCE4AQ5TA78 99 aa2.8□□□□□ -1.96
HERC4-211ENST00000492996 KRTAP19-4Q3LI73 84 aa2.78□□□□□ -1.96
HERC4-211ENST00000492996 KRTAP10-7P60409 375 aaPredicted RBP2.75□□□□□ -1.97
HERC4-211ENST00000492996 KRTAP2-2Q9BYT5 123 aa2.75□□□□□ -1.97
HERC4-211ENST00000492996 KRTAP2-1Q9BYU5 128 aa2.75□□□□□ -1.97
HERC4-211ENST00000492996 KRTAP8-1Q8IUC2 63 aa2.71□□□□□ -1.98
HERC4-211ENST00000492996 KMT2DO14686 5537 aa2.7□□□□□ -1.98
HERC4-211ENST00000492996 KRTAP12-3P60328 96 aa2.69□□□□□ -1.98
HERC4-211ENST00000492996 FSIP2Q5CZC0 6907 aa2.66□□□□□ -1.98
HERC4-211ENST00000492996 KRTAP5-4Q6L8H1 288 aa2.66□□□□□ -1.98
HERC4-211ENST00000492996 KRTAP19-5Q3LI72 72 aa2.62□□□□□ -1.99
HERC4-211ENST00000492996 KRTAP4-11Q9BYQ6 195 aa2.62□□□□□ -1.99
HERC4-211ENST00000492996 LCE5AQ5TCM9 118 aa2.6□□□□□ -1.99
HERC4-211ENST00000492996 HMCN1Q96RW7 5635 aa2.6□□□□□ -1.99
HERC4-211ENST00000492996 MACF1Q9UPN3 7388 aaKnown RBP2.52□□□□□ -2.01
HERC4-211ENST00000492996 GPR98Q8WXG9 6306 aa2.51□□□□□ -2.01
HERC4-211ENST00000492996 SPRR2EP22531 72 aa2.51□□□□□ -2.01
HERC4-211ENST00000492996 SPRR2BP35325 72 aa2.51□□□□□ -2.01
HERC4-211ENST00000492996 SPRR2AP35326 72 aa2.51□□□□□ -2.01
HERC4-211ENST00000492996 KRTAP19-7Q3SYF9 63 aa2.51□□□□□ -2.01
HERC4-211ENST00000492996 KRTAP5-7Q6L8G8 165 aa2.51□□□□□ -2.01
HERC4-211ENST00000492996 LCE3CQ5T5A8 94 aa2.5□□□□□ -2.01
HERC4-211ENST00000492996 MT1EP04732 61 aa2.48□□□□□ -2.01
HERC4-211ENST00000492996 SPRR2DP22532 72 aa2.47□□□□□ -2.01
HERC4-211ENST00000492996 KRTAP5-5Q701N2 237 aaPredicted RBP2.46□□□□□ -2.02
HERC4-211ENST00000492996 KRTAP19-3Q7Z4W3 81 aa2.46□□□□□ -2.02
HERC4-211ENST00000492996 MT1GP13640 62 aa2.45□□□□□ -2.02
HERC4-211ENST00000492996 KRTAP9-6A8MVA2 160 aa2.44□□□□□ -2.02
HERC4-211ENST00000492996 MUC12Q9UKN1 5478 aa2.43□□□□□ -2.02
HERC4-211ENST00000492996 KRTAP5-10Q6L8G5 202 aa2.43□□□□□ -2.02
HERC4-211ENST00000492996 MT1LQ93083 61 aa2.42□□□□□ -2.02
HERC4-211ENST00000492996 SPRR2FQ96RM1 72 aa2.4□□□□□ -2.03
HERC4-211ENST00000492996 KRTAP4-3Q9BYR4 195 aa2.36□□□□□ -2.03
HERC4-211ENST00000492996 KRTAP5-2Q701N4 177 aa2.36□□□□□ -2.03
HERC4-211ENST00000492996 DSTQ03001 7570 aaKnown RBP2.35□□□□□ -2.03
HERC4-211ENST00000492996 MT1MQ8N339 61 aa2.35□□□□□ -2.03
HERC4-211ENST00000492996 MDN1Q9NU22 5596 aa2.32□□□□□ -2.04
HERC4-211ENST00000492996 SYNE2Q8WXH0 6885 aaKnown RBP2.31□□□□□ -2.04
HERC4-211ENST00000492996 MUC5BQ9HC84 5762 aaPredicted RBP2.28□□□□□ -2.04
HERC4-211ENST00000492996 KRTAP12-4P60329 112 aa2.25□□□□□ -2.05
HERC4-211ENST00000492996 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
HERC4-211ENST00000492996 KRTAP20-2Q3LI61 65 aa2.21□□□□□ -2.06
HERC4-211ENST00000492996 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.2□□□□□ -2.06
HERC4-211ENST00000492996 SYNE1Q8NF91 8797 aaKnown RBP2.2□□□□□ -2.06
HERC4-211ENST00000492996 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
HERC4-211ENST00000492996 AHNAKQ09666 5890 aaKnown RBP2.18□□□□□ -2.06
HERC4-211ENST00000492996 LCE1FQ5T754 118 aa2.15□□□□□ -2.07
HERC4-211ENST00000492996 MT1AP04731 61 aa2.1□□□□□ -2.07
HERC4-211ENST00000492996 LCE1EQ5T753 118 aa2.09□□□□□ -2.07
HERC4-211ENST00000492996 KRTAP6-1Q3LI64 71 aa2.07□□□□□ -2.08
HERC4-211ENST00000492996 OBSCNQ5VST9 7968 aa2.07□□□□□ -2.08
HERC4-211ENST00000492996 PRM1P04553 51 aa2.04□□□□□ -2.08
HERC4-211ENST00000492996 KRTAP5-1Q6L8H4 278 aa2.04□□□□□ -2.08
HERC4-211ENST00000492996 LCE3EQ5T5B0 92 aa2□□□□□ -2.09
HERC4-211ENST00000492996 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
HERC4-211ENST00000492996 LCE3DQ9BYE3 92 aa1.93□□□□□ -2.1
HERC4-211ENST00000492996 KRTAP6-2Q3LI66 62 aa1.89□□□□□ -2.11
HERC4-211ENST00000492996 MUC5ACP98088 5654 aa1.88□□□□□ -2.11
HERC4-211ENST00000492996 MT3P25713 68 aa1.88□□□□□ -2.11
HERC4-211ENST00000492996 MT4P47944 62 aa1.87□□□□□ -2.11
HERC4-211ENST00000492996 LCE1CQ5T751 118 aa1.81□□□□□ -2.12
HERC4-211ENST00000492996 LCE1BQ5T7P3 118 aa1.81□□□□□ -2.12
HERC4-211ENST00000492996 KRTAP5-11Q6L8G4 156 aa1.76□□□□□ -2.13
HERC4-211ENST00000492996 KRTAP4-4Q9BYR3 166 aa1.64□□□□□ -2.15
HERC4-211ENST00000492996 KRTAP21-2Q3LI59 83 aa1.4□□□□□ -2.19
HERC4-211ENST00000492996 PHGR1C9JFL3 82 aa1.39□□□□□ -2.19
HERC4-211ENST00000492996 KRTAP21-1Q3LI58 79 aa1.21□□□□□ -2.22
HERC4-211ENST00000492996 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 109.1 ms