RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 KRTAP8-1Q8IUC2 63 aa3.7□□□□□ -1.82
BRCA1-219ENST00000491747 SPRR2FQ96RM1 72 aa3.69□□□□□ -1.82
BRCA1-219ENST00000491747 LCE3AQ5TA76 89 aa3.68□□□□□ -1.82
BRCA1-219ENST00000491747 MDN1Q9NU22 5596 aa3.65□□□□□ -1.83
BRCA1-219ENST00000491747 SPRR2EP22531 72 aa3.61□□□□□ -1.83
BRCA1-219ENST00000491747 SPRR2BP35325 72 aa3.61□□□□□ -1.83
BRCA1-219ENST00000491747 SPRR2AP35326 72 aa3.61□□□□□ -1.83
BRCA1-219ENST00000491747 LCE1AQ5T7P2 110 aa3.59□□□□□ -1.83
BRCA1-219ENST00000491747 KRTAP20-1Q3LI63 56 aa3.56□□□□□ -1.84
BRCA1-219ENST00000491747 LCE3BQ5TA77 95 aa3.54□□□□□ -1.84
BRCA1-219ENST00000491747 KRTAP12-3P60328 96 aa3.52□□□□□ -1.85
BRCA1-219ENST00000491747 INE1O15225 51 aa3.51□□□□□ -1.85
BRCA1-219ENST00000491747 KRTAP2-3P0C7H8 128 aa3.5□□□□□ -1.85
BRCA1-219ENST00000491747 KRTAP19-7Q3SYF9 63 aa3.5□□□□□ -1.85
BRCA1-219ENST00000491747 KRTAP9-9Q9BYP9 154 aa3.5□□□□□ -1.85
BRCA1-219ENST00000491747 KRTAP9-4Q9BYQ2 154 aa3.5□□□□□ -1.85
BRCA1-219ENST00000491747 KRTAP4-7Q9BYR0 210 aa3.5□□□□□ -1.85
BRCA1-219ENST00000491747 KRTAP2-4Q9BYR9 128 aa3.5□□□□□ -1.85
BRCA1-219ENST00000491747 SPRR2DP22532 72 aa3.48□□□□□ -1.85
BRCA1-219ENST00000491747 MT1EP04732 61 aa3.45□□□□□ -1.86
BRCA1-219ENST00000491747 KRTAP19-5Q3LI72 72 aa3.44□□□□□ -1.86
BRCA1-219ENST00000491747 KRTAP5-3Q6L8H2 238 aa3.42□□□□□ -1.86
BRCA1-219ENST00000491747 LCE5AQ5TCM9 118 aa3.39□□□□□ -1.87
BRCA1-219ENST00000491747 KRTAP19-3Q7Z4W3 81 aa3.39□□□□□ -1.87
BRCA1-219ENST00000491747 KRTAP2-2Q9BYT5 123 aa3.39□□□□□ -1.87
BRCA1-219ENST00000491747 KRTAP2-1Q9BYU5 128 aa3.39□□□□□ -1.87
BRCA1-219ENST00000491747 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
BRCA1-219ENST00000491747 KRTAP4-2Q9BYR5 136 aa3.35□□□□□ -1.87
BRCA1-219ENST00000491747 LCE3CQ5T5A8 94 aa3.32□□□□□ -1.88
BRCA1-219ENST00000491747 LCE1DQ5T752 114 aa3.32□□□□□ -1.88
BRCA1-219ENST00000491747 MT1LQ93083 61 aa3.32□□□□□ -1.88
BRCA1-219ENST00000491747 MT1GP13640 62 aa3.31□□□□□ -1.88
BRCA1-219ENST00000491747 DSTQ03001 7570 aaKnown RBP3.3□□□□□ -1.88
BRCA1-219ENST00000491747 KRTAP4-9Q9BYQ8 210 aa3.3□□□□□ -1.88
BRCA1-219ENST00000491747 MT1MQ8N339 61 aa3.28□□□□□ -1.88
BRCA1-219ENST00000491747 KRTAP4-3Q9BYR4 195 aa3.24□□□□□ -1.89
BRCA1-219ENST00000491747 KRTAP9-6A8MVA2 160 aa3.17□□□□□ -1.9
BRCA1-219ENST00000491747 KRTAP19-4Q3LI73 84 aa3.17□□□□□ -1.9
BRCA1-219ENST00000491747 KRTAP4-11Q9BYQ6 195 aa3.08□□□□□ -1.92
BRCA1-219ENST00000491747 LCE4AQ5TA78 99 aa3.07□□□□□ -1.92
BRCA1-219ENST00000491747 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
BRCA1-219ENST00000491747 MT4P47944 62 aa3.05□□□□□ -1.92
BRCA1-219ENST00000491747 KRTAP5-5Q701N2 237 aaPredicted RBP3.01□□□□□ -1.93
BRCA1-219ENST00000491747 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
BRCA1-219ENST00000491747 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
BRCA1-219ENST00000491747 SYNE1Q8NF91 8797 aaKnown RBP2.87□□□□□ -1.95
BRCA1-219ENST00000491747 GPR98Q8WXG9 6306 aa2.87□□□□□ -1.95
BRCA1-219ENST00000491747 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
BRCA1-219ENST00000491747 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
BRCA1-219ENST00000491747 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
BRCA1-219ENST00000491747 MT1AP04731 61 aa2.81□□□□□ -1.96
BRCA1-219ENST00000491747 KRTAP5-10Q6L8G5 202 aa2.8□□□□□ -1.96
BRCA1-219ENST00000491747 KRTAP5-2Q701N4 177 aa2.71□□□□□ -1.98
BRCA1-219ENST00000491747 KRTAP5-7Q6L8G8 165 aa2.66□□□□□ -1.98
BRCA1-219ENST00000491747 KRTAP6-2Q3LI66 62 aa2.66□□□□□ -1.98
BRCA1-219ENST00000491747 LCE3DQ9BYE3 92 aa2.59□□□□□ -2
BRCA1-219ENST00000491747 LCE3EQ5T5B0 92 aa2.57□□□□□ -2
BRCA1-219ENST00000491747 MT3P25713 68 aa2.55□□□□□ -2
BRCA1-219ENST00000491747 KRTAP5-8O75690 187 aa2.53□□□□□ -2
BRCA1-219ENST00000491747 OBSCNQ5VST9 7968 aa2.52□□□□□ -2.01
BRCA1-219ENST00000491747 PRM1P04553 51 aa2.48□□□□□ -2.01
BRCA1-219ENST00000491747 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.44□□□□□ -2.02
BRCA1-219ENST00000491747 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
BRCA1-219ENST00000491747 AHNAKQ09666 5890 aaKnown RBP2.33□□□□□ -2.04
BRCA1-219ENST00000491747 LCE1EQ5T753 118 aa2.32□□□□□ -2.04
BRCA1-219ENST00000491747 MUC5ACP98088 5654 aa2.31□□□□□ -2.04
BRCA1-219ENST00000491747 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
BRCA1-219ENST00000491747 LCE1BQ5T7P3 118 aa2.19□□□□□ -2.06
BRCA1-219ENST00000491747 LCE1CQ5T751 118 aa2.16□□□□□ -2.06
BRCA1-219ENST00000491747 KRTAP5-11Q6L8G4 156 aa2.05□□□□□ -2.08
BRCA1-219ENST00000491747 KRTAP4-4Q9BYR3 166 aa2□□□□□ -2.09
BRCA1-219ENST00000491747 LCE1FQ5T754 118 aa1.98□□□□□ -2.09
BRCA1-219ENST00000491747 KRTAP21-2Q3LI59 83 aa1.86□□□□□ -2.11
BRCA1-219ENST00000491747 PHGR1C9JFL3 82 aa1.69□□□□□ -2.14
BRCA1-219ENST00000491747 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
BRCA1-219ENST00000491747 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
BRCA1-219ENST00000491747 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 133.8 ms