RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 MT1MQ8N339 61 aa3.19□□□□□ -1.9
HDAC3-211ENST00000491581 A8MU10 97 aa3.18□□□□□ -1.9
HDAC3-211ENST00000491581 MT1LQ93083 61 aa3.17□□□□□ -1.9
HDAC3-211ENST00000491581 A0A1B0GU33 70 aa3.16□□□□□ -1.9
HDAC3-211ENST00000491581 MT1GP13640 62 aa3.16□□□□□ -1.9
HDAC3-211ENST00000491581 LCE3AQ5TA76 89 aa3.15□□□□□ -1.91
HDAC3-211ENST00000491581 SERP1Q9Y6X1 66 aa3.15□□□□□ -1.91
HDAC3-211ENST00000491581 KRTAP5-4Q6L8H1 288 aa3.14□□□□□ -1.91
HDAC3-211ENST00000491581 C10orf95Q9H7T3 257 aa3.13□□□□□ -1.91
HDAC3-211ENST00000491581 H7BZZ5 65 aa3.12□□□□□ -1.91
HDAC3-211ENST00000491581 SEC61GP60059 68 aa3.12□□□□□ -1.91
HDAC3-211ENST00000491581 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
HDAC3-211ENST00000491581 COX7CP15954 63 aa3.1□□□□□ -1.91
HDAC3-211ENST00000491581 PP632Q6XCG6 107 aa3.08□□□□□ -1.92
HDAC3-211ENST00000491581 HMCN1Q96RW7 5635 aa3.06□□□□□ -1.92
HDAC3-211ENST00000491581 A0A1B0GU69 56 aa3.05□□□□□ -1.92
HDAC3-211ENST00000491581 AHNAK2Q8IVF2 5795 aa3.03□□□□□ -1.92
HDAC3-211ENST00000491581 SMIM26A0A096LP01 95 aa3.01□□□□□ -1.93
HDAC3-211ENST00000491581 KRTAP5-10Q6L8G5 202 aa3.01□□□□□ -1.93
HDAC3-211ENST00000491581 TNP1P09430 55 aa3□□□□□ -1.93
HDAC3-211ENST00000491581 CCDC179H3BU77 68 aa2.97□□□□□ -1.93
HDAC3-211ENST00000491581 KRTAP12-3P60328 96 aa2.96□□□□□ -1.94
HDAC3-211ENST00000491581 ANAPC13Q9BS18 74 aa2.93□□□□□ -1.94
HDAC3-211ENST00000491581 KRTAP20-2Q3LI61 65 aa2.92□□□□□ -1.94
HDAC3-211ENST00000491581 KRTAP5-5Q701N2 237 aaPredicted RBP2.92□□□□□ -1.94
HDAC3-211ENST00000491581 KRTAP5-7Q6L8G8 165 aa2.87□□□□□ -1.95
HDAC3-211ENST00000491581 LINC01558Q9Y6Z2 57 aa2.87□□□□□ -1.95
HDAC3-211ENST00000491581 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
HDAC3-211ENST00000491581 PRR15LQ9BU68 103 aa2.84□□□□□ -1.95
HDAC3-211ENST00000491581 SYNE1Q8NF91 8797 aaKnown RBP2.82□□□□□ -1.96
HDAC3-211ENST00000491581 SPRR5A0A1B0GTR4 108 aa2.81□□□□□ -1.96
HDAC3-211ENST00000491581 UQCR11O14957 56 aa2.78□□□□□ -1.96
HDAC3-211ENST00000491581 KRTAP12-4P60329 112 aa2.78□□□□□ -1.96
HDAC3-211ENST00000491581 ATP5EP56381 51 aaPredicted RBP2.77□□□□□ -1.97
HDAC3-211ENST00000491581 KRTAP9-6A8MVA2 160 aa2.76□□□□□ -1.97
HDAC3-211ENST00000491581 MIR22HGQ0VDD5 57 aa2.76□□□□□ -1.97
HDAC3-211ENST00000491581 KRTAP25-1Q3LHN0 102 aa2.75□□□□□ -1.97
HDAC3-211ENST00000491581 PSPHP1O15172 72 aa2.72□□□□□ -1.97
HDAC3-211ENST00000491581 KRTAP6-1Q3LI64 71 aa2.72□□□□□ -1.97
HDAC3-211ENST00000491581 LCE3CQ5T5A8 94 aa2.72□□□□□ -1.97
HDAC3-211ENST00000491581 TMEM258P61165 79 aa2.71□□□□□ -1.98
HDAC3-211ENST00000491581 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
HDAC3-211ENST00000491581 MT1AP04731 61 aa2.66□□□□□ -1.98
HDAC3-211ENST00000491581 MT3P25713 68 aa2.64□□□□□ -1.99
HDAC3-211ENST00000491581 KRTAP5-8O75690 187 aa2.62□□□□□ -1.99
HDAC3-211ENST00000491581 K7ERS5 55 aa2.61□□□□□ -1.99
HDAC3-211ENST00000491581 KRTAP6-2Q3LI66 62 aa2.61□□□□□ -1.99
HDAC3-211ENST00000491581 Q1T7F1 81 aa2.57□□□□□ -2
HDAC3-211ENST00000491581 A6NED7 52 aa2.55□□□□□ -2
HDAC3-211ENST00000491581 CDC42SE1Q9NRR8 79 aa2.52□□□□□ -2.01
HDAC3-211ENST00000491581 ROMO1P60602 79 aa2.51□□□□□ -2.01
HDAC3-211ENST00000491581 V9GYY9 64 aa2.51□□□□□ -2.01
HDAC3-211ENST00000491581 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
HDAC3-211ENST00000491581 RPS28P62857 69 aaKnown RBP2.47□□□□□ -2.01
HDAC3-211ENST00000491581 AHNAKQ09666 5890 aaKnown RBP2.47□□□□□ -2.01
HDAC3-211ENST00000491581 MUC5BQ9HC84 5762 aaPredicted RBP2.42□□□□□ -2.02
HDAC3-211ENST00000491581 LCE1FQ5T754 118 aa2.35□□□□□ -2.03
HDAC3-211ENST00000491581 PCP4P48539 62 aa2.22□□□□□ -2.05
HDAC3-211ENST00000491581 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
HDAC3-211ENST00000491581 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
HDAC3-211ENST00000491581 BRK1Q8WUW1 75 aa2.06□□□□□ -2.08
HDAC3-211ENST00000491581 LCE3EQ5T5B0 92 aa2.05□□□□□ -2.08
HDAC3-211ENST00000491581 PRAC1Q96KF2 57 aa2□□□□□ -2.09
HDAC3-211ENST00000491581 LCE3DQ9BYE3 92 aa1.91□□□□□ -2.1
HDAC3-211ENST00000491581 PMAIP1Q13794 54 aa1.89□□□□□ -2.11
HDAC3-211ENST00000491581 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
HDAC3-211ENST00000491581 KRTAP21-2Q3LI59 83 aa1.78□□□□□ -2.12
HDAC3-211ENST00000491581 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
HDAC3-211ENST00000491581 SVIPQ8NHG7 77 aa1.58□□□□□ -2.16
HDAC3-211ENST00000491581 KTN1-AS1Q86SY8 53 aa1.57□□□□□ -2.16
HDAC3-211ENST00000491581 PRO0628Q9UI54 55 aa1.57□□□□□ -2.16
HDAC3-211ENST00000491581 NDUFAF8A1L188 74 aa1.55□□□□□ -2.16
HDAC3-211ENST00000491581 LUZP6Q538Z0 58 aa1.5□□□□□ -2.17
HDAC3-211ENST00000491581 PRM1P04553 51 aa1.34□□□□□ -2.19
HDAC3-211ENST00000491581 A0A0A0MQY5 61 aa1.33□□□□□ -2.2
HDAC3-211ENST00000491581 KRTAP21-1Q3LI58 79 aa1.27□□□□□ -2.21
HDAC3-211ENST00000491581 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.24
HDAC3-211ENST00000491581 INE1O15225 51 aa0.75□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 13.4 ms