RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 MT1LQ93083 61 aa4.92□□□□□ -1.62
VARS-227ENST00000489979 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
VARS-227ENST00000489979 KRTAP5-3Q6L8H2 238 aa4.91□□□□□ -1.62
VARS-227ENST00000489979 SMIM26A0A096LP01 95 aa4.89□□□□□ -1.63
VARS-227ENST00000489979 SPATA8Q6RVD6 105 aa4.89□□□□□ -1.63
VARS-227ENST00000489979 LINC01558Q9Y6Z2 57 aa4.87□□□□□ -1.63
VARS-227ENST00000489979 SPINT4Q6UDR6 99 aa4.85□□□□□ -1.63
VARS-227ENST00000489979 V9GYY9 64 aa4.81□□□□□ -1.64
VARS-227ENST00000489979 RPS28P62857 69 aaKnown RBP4.8□□□□□ -1.64
VARS-227ENST00000489979 SPRR5A0A1B0GTR4 108 aa4.79□□□□□ -1.64
VARS-227ENST00000489979 PSPHP1O15172 72 aa4.78□□□□□ -1.64
VARS-227ENST00000489979 UQCR11O14957 56 aa4.77□□□□□ -1.65
VARS-227ENST00000489979 Q1T7F1 81 aa4.77□□□□□ -1.65
VARS-227ENST00000489979 KRTAP20-2Q3LI61 65 aa4.76□□□□□ -1.65
VARS-227ENST00000489979 KRTAP12-1P59990 96 aa4.75□□□□□ -1.65
VARS-227ENST00000489979 A8MU10 97 aa4.73□□□□□ -1.65
VARS-227ENST00000489979 C10orf95Q9H7T3 257 aa4.73□□□□□ -1.65
VARS-227ENST00000489979 LCE3AQ5TA76 89 aa4.7□□□□□ -1.66
VARS-227ENST00000489979 KRTAP4-7Q9BYR0 210 aa4.68□□□□□ -1.66
VARS-227ENST00000489979 MIR22HGQ0VDD5 57 aa4.67□□□□□ -1.66
VARS-227ENST00000489979 K7ERS5 55 aa4.65□□□□□ -1.67
VARS-227ENST00000489979 KRTAP5-5Q701N2 237 aaPredicted RBP4.62□□□□□ -1.67
VARS-227ENST00000489979 A6NED7 52 aa4.61□□□□□ -1.67
VARS-227ENST00000489979 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
VARS-227ENST00000489979 TNP1P09430 55 aa4.57□□□□□ -1.68
VARS-227ENST00000489979 SYNE1Q8NF91 8797 aaKnown RBP4.56□□□□□ -1.68
VARS-227ENST00000489979 KRTAP12-3P60328 96 aa4.5□□□□□ -1.69
VARS-227ENST00000489979 LOC100996750A0A140TA64 210 aa4.46□□□□□ -1.7
VARS-227ENST00000489979 CDC42SE1Q9NRR8 79 aa4.46□□□□□ -1.7
VARS-227ENST00000489979 KRTAP4-11Q9BYQ6 195 aa4.44□□□□□ -1.7
VARS-227ENST00000489979 KRTAP25-1Q3LHN0 102 aa4.4□□□□□ -1.71
VARS-227ENST00000489979 BRK1Q8WUW1 75 aa4.39□□□□□ -1.71
VARS-227ENST00000489979 AHNAKQ09666 5890 aaKnown RBP4.34□□□□□ -1.71
VARS-227ENST00000489979 MUC5BQ9HC84 5762 aaPredicted RBP4.33□□□□□ -1.72
VARS-227ENST00000489979 MUC5ACP98088 5654 aa4.31□□□□□ -1.72
VARS-227ENST00000489979 KRTAP5-8O75690 187 aa4.31□□□□□ -1.72
VARS-227ENST00000489979 KRTAP5-2Q701N4 177 aa4.31□□□□□ -1.72
VARS-227ENST00000489979 ROMO1P60602 79 aa4.27□□□□□ -1.73
VARS-227ENST00000489979 KRTAP23-1A1A580 65 aa4.24□□□□□ -1.73
VARS-227ENST00000489979 KRTAP6-1Q3LI64 71 aa4.19□□□□□ -1.74
VARS-227ENST00000489979 KRTAP19-4Q3LI73 84 aa4.18□□□□□ -1.74
VARS-227ENST00000489979 MT1AP04731 61 aa4.17□□□□□ -1.74
VARS-227ENST00000489979 KRTAP9-9Q9BYP9 154 aa4.15□□□□□ -1.75
VARS-227ENST00000489979 OBSCNQ5VST9 7968 aa4.11□□□□□ -1.75
VARS-227ENST00000489979 LCE3CQ5T5A8 94 aa4.1□□□□□ -1.75
VARS-227ENST00000489979 PMAIP1Q13794 54 aa4.09□□□□□ -1.75
VARS-227ENST00000489979 KRTAP9-4Q9BYQ2 154 aa4.09□□□□□ -1.75
VARS-227ENST00000489979 PRO0628Q9UI54 55 aa4.09□□□□□ -1.75
VARS-227ENST00000489979 KRTAP6-2Q3LI66 62 aa4.08□□□□□ -1.76
VARS-227ENST00000489979 KRTAP15-1Q3LI76 137 aa4.07□□□□□ -1.76
VARS-227ENST00000489979 PRAC1Q96KF2 57 aa3.99□□□□□ -1.77
VARS-227ENST00000489979 KRTAP5-1Q6L8H4 278 aa3.95□□□□□ -1.78
VARS-227ENST00000489979 KRTAP9-6A8MVA2 160 aa3.9□□□□□ -1.79
VARS-227ENST00000489979 KTN1-AS1Q86SY8 53 aa3.86□□□□□ -1.79
VARS-227ENST00000489979 MT3P25713 68 aa3.84□□□□□ -1.79
VARS-227ENST00000489979 SVIPQ8NHG7 77 aa3.71□□□□□ -1.82
VARS-227ENST00000489979 LCE1EQ5T753 118 aa3.61□□□□□ -1.83
VARS-227ENST00000489979 LCE1BQ5T7P3 118 aa3.47□□□□□ -1.85
VARS-227ENST00000489979 KRTAP4-2Q9BYR5 136 aa3.47□□□□□ -1.85
VARS-227ENST00000489979 LCE1CQ5T751 118 aa3.35□□□□□ -1.87
VARS-227ENST00000489979 KRTAP4-12Q9BQ66 201 aa3.32□□□□□ -1.88
VARS-227ENST00000489979 LUZP6Q538Z0 58 aa3.21□□□□□ -1.9
VARS-227ENST00000489979 KRTAP5-11Q6L8G4 156 aa3.13□□□□□ -1.91
VARS-227ENST00000489979 LCE1FQ5T754 118 aa3.08□□□□□ -1.92
VARS-227ENST00000489979 PHGR1C9JFL3 82 aa3.01□□□□□ -1.93
VARS-227ENST00000489979 KRTAP5-6Q6L8G9 129 aaPredicted RBP3□□□□□ -1.93
VARS-227ENST00000489979 NDUFAF8A1L188 74 aa2.98□□□□□ -1.93
VARS-227ENST00000489979 LCE3DQ9BYE3 92 aa2.89□□□□□ -1.95
VARS-227ENST00000489979 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
VARS-227ENST00000489979 LCE3EQ5T5B0 92 aa2.76□□□□□ -1.97
VARS-227ENST00000489979 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
VARS-227ENST00000489979 MUC19Q7Z5P9 8384 aa2.59□□□□□ -2
VARS-227ENST00000489979 A0A0A0MQY5 61 aa2.46□□□□□ -2.02
VARS-227ENST00000489979 INE1O15225 51 aa2.35□□□□□ -2.03
VARS-227ENST00000489979 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.04
VARS-227ENST00000489979 PRM1P04553 51 aa2.24□□□□□ -2.05
VARS-227ENST00000489979 H3BS24 57 aa2.17□□□□□ -2.06
VARS-227ENST00000489979 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 72.7 ms