RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 LPAP08519 4548 aa2.07□□□□□ -2.08
SNRNP40-206ENST00000489853 KRTAP4-3Q9BYR4 195 aa2.04□□□□□ -2.08
SNRNP40-206ENST00000489853 KRTAP10-5P60370 271 aa2.03□□□□□ -2.08
SNRNP40-206ENST00000489853 FAT4Q6V0I7 4981 aa2.03□□□□□ -2.09
SNRNP40-206ENST00000489853 FSIP2Q5CZC0 6907 aa2.01□□□□□ -2.09
SNRNP40-206ENST00000489853 KRTAP9-6A8MVA2 160 aa1.98□□□□□ -2.09
SNRNP40-206ENST00000489853 GPR98Q8WXG9 6306 aa1.98□□□□□ -2.09
SNRNP40-206ENST00000489853 LCE3EQ5T5B0 92 aa1.96□□□□□ -2.1
SNRNP40-206ENST00000489853 CRCT1Q9UGL9 99 aa1.92□□□□□ -2.1
SNRNP40-206ENST00000489853 LCE3AQ5TA76 89 aa1.91□□□□□ -2.1
SNRNP40-206ENST00000489853 OBSCNQ5VST9 7968 aa1.91□□□□□ -2.1
SNRNP40-206ENST00000489853 KRTAP8-1Q8IUC2 63 aa1.91□□□□□ -2.1
SNRNP40-206ENST00000489853 FLGP20930 4061 aaPredicted RBP1.9□□□□□ -2.11
SNRNP40-206ENST00000489853 KRTAP10-10P60014 251 aa1.89□□□□□ -2.11
SNRNP40-206ENST00000489853 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
SNRNP40-206ENST00000489853 KRTAP19-2Q3LHN2 52 aa1.88□□□□□ -2.11
SNRNP40-206ENST00000489853 KRTAP4-1Q9BYQ7 146 aa1.86□□□□□ -2.11
SNRNP40-206ENST00000489853 MUC17Q685J3 4493 aa1.86□□□□□ -2.11
SNRNP40-206ENST00000489853 KRTAP12-3P60328 96 aa1.83□□□□□ -2.12
SNRNP40-206ENST00000489853 SPRR2GQ9BYE4 73 aa1.83□□□□□ -2.12
SNRNP40-206ENST00000489853 USH2AO75445 5202 aa1.82□□□□□ -2.12
SNRNP40-206ENST00000489853 SSPOA2VEC9 5147 aa1.8□□□□□ -2.12
SNRNP40-206ENST00000489853 FCGBPQ9Y6R7 5405 aaPredicted RBP1.79□□□□□ -2.12
SNRNP40-206ENST00000489853 SYNE2Q8WXH0 6885 aaKnown RBP1.77□□□□□ -2.13
SNRNP40-206ENST00000489853 MT1HP80294 61 aa1.77□□□□□ -2.13
SNRNP40-206ENST00000489853 KRTAP2-3P0C7H8 128 aa1.76□□□□□ -2.13
SNRNP40-206ENST00000489853 KRTAP2-4Q9BYR9 128 aa1.76□□□□□ -2.13
SNRNP40-206ENST00000489853 KRTAP2-1Q9BYU5 128 aa1.76□□□□□ -2.13
SNRNP40-206ENST00000489853 MUC5BQ9HC84 5762 aaPredicted RBP1.74□□□□□ -2.13
SNRNP40-206ENST00000489853 LCE3DQ9BYE3 92 aa1.72□□□□□ -2.13
SNRNP40-206ENST00000489853 MACF1Q9UPN3 7388 aaKnown RBP1.71□□□□□ -2.14
SNRNP40-206ENST00000489853 KRTAP19-8Q3LI54 63 aa1.71□□□□□ -2.14
SNRNP40-206ENST00000489853 MT1XP80297 61 aa1.7□□□□□ -2.14
SNRNP40-206ENST00000489853 M0R2T5 61 aa1.67□□□□□ -2.14
SNRNP40-206ENST00000489853 KRTAP19-5Q3LI72 72 aa1.66□□□□□ -2.14
SNRNP40-206ENST00000489853 MT1BP07438 61 aa1.65□□□□□ -2.15
SNRNP40-206ENST00000489853 NEBP20929 6669 aa1.64□□□□□ -2.15
SNRNP40-206ENST00000489853 MT1FP04733 61 aa1.64□□□□□ -2.15
SNRNP40-206ENST00000489853 MT2AP02795 61 aa1.63□□□□□ -2.15
SNRNP40-206ENST00000489853 MUC12Q9UKN1 5478 aa1.62□□□□□ -2.15
SNRNP40-206ENST00000489853 KRTAP6-3Q3LI67 103 aa1.61□□□□□ -2.15
SNRNP40-206ENST00000489853 KRTAP12-4P60329 112 aa1.6□□□□□ -2.15
SNRNP40-206ENST00000489853 KRTAP19-6Q3LI70 58 aa1.6□□□□□ -2.15
SNRNP40-206ENST00000489853 AHNAKQ09666 5890 aaKnown RBP1.58□□□□□ -2.16
SNRNP40-206ENST00000489853 MDN1Q9NU22 5596 aa1.58□□□□□ -2.16
SNRNP40-206ENST00000489853 KMT2DO14686 5537 aa1.56□□□□□ -2.16
SNRNP40-206ENST00000489853 KRTAP5-5Q701N2 237 aaPredicted RBP1.55□□□□□ -2.16
SNRNP40-206ENST00000489853 KRTAP20-1Q3LI63 56 aa1.54□□□□□ -2.16
SNRNP40-206ENST00000489853 KRTAP19-7Q3SYF9 63 aa1.51□□□□□ -2.17
SNRNP40-206ENST00000489853 MT1EP04732 61 aa1.5□□□□□ -2.17
SNRNP40-206ENST00000489853 MT1LQ93083 61 aa1.5□□□□□ -2.17
SNRNP40-206ENST00000489853 LCE1CQ5T751 118 aa1.46□□□□□ -2.18
SNRNP40-206ENST00000489853 LCE1BQ5T7P3 118 aa1.46□□□□□ -2.18
SNRNP40-206ENST00000489853 MT1AP04731 61 aa1.44□□□□□ -2.18
SNRNP40-206ENST00000489853 PRM1P04553 51 aa1.43□□□□□ -2.18
SNRNP40-206ENST00000489853 MT1GP13640 62 aa1.4□□□□□ -2.19
SNRNP40-206ENST00000489853 SPRR2EP22531 72 aa1.38□□□□□ -2.19
SNRNP40-206ENST00000489853 SPRR2BP35325 72 aa1.38□□□□□ -2.19
SNRNP40-206ENST00000489853 SPRR2AP35326 72 aa1.38□□□□□ -2.19
SNRNP40-206ENST00000489853 DSTQ03001 7570 aaKnown RBP1.36□□□□□ -2.19
SNRNP40-206ENST00000489853 SPRR2FQ96RM1 72 aa1.36□□□□□ -2.19
SNRNP40-206ENST00000489853 MT1MQ8N339 61 aa1.34□□□□□ -2.19
SNRNP40-206ENST00000489853 SPRR2DP22532 72 aa1.32□□□□□ -2.2
SNRNP40-206ENST00000489853 KRTAP19-3Q7Z4W3 81 aa1.31□□□□□ -2.2
SNRNP40-206ENST00000489853 SYNE1Q8NF91 8797 aaKnown RBP1.31□□□□□ -2.2
SNRNP40-206ENST00000489853 KRTAP6-2Q3LI66 62 aa1.3□□□□□ -2.2
SNRNP40-206ENST00000489853 KRTAP5-10Q6L8G5 202 aa1.28□□□□□ -2.2
SNRNP40-206ENST00000489853 AHNAK2Q8IVF2 5795 aa1.28□□□□□ -2.2
SNRNP40-206ENST00000489853 MUC19Q7Z5P9 8384 aa1.28□□□□□ -2.2
SNRNP40-206ENST00000489853 KRTAP6-1Q3LI64 71 aa1.27□□□□□ -2.21
SNRNP40-206ENST00000489853 KRTAP5-7Q6L8G8 165 aa1.23□□□□□ -2.21
SNRNP40-206ENST00000489853 MT4P47944 62 aa1.2□□□□□ -2.22
SNRNP40-206ENST00000489853 MUC5ACP98088 5654 aa1.12□□□□□ -2.23
SNRNP40-206ENST00000489853 KRTAP20-2Q3LI61 65 aa1.1□□□□□ -2.23
SNRNP40-206ENST00000489853 KRTAP21-2Q3LI59 83 aa1.07□□□□□ -2.24
SNRNP40-206ENST00000489853 KRTAP21-1Q3LI58 79 aa0.96□□□□□ -2.26
SNRNP40-206ENST00000489853 PHGR1C9JFL3 82 aa0.71□□□□□ -2.3
SNRNP40-206ENST00000489853 MUC16Q8WXI7 14507 aa0.54□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 196.9 ms