RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SPATA8Q6RVD6 105 aa4.41□□□□□ -1.7
CPSF3-204ENST00000489403 SPINT4Q6UDR6 99 aa4.41□□□□□ -1.7
CPSF3-204ENST00000489403 AHNAK2Q8IVF2 5795 aa4.4□□□□□ -1.7
CPSF3-204ENST00000489403 MT1LQ93083 61 aa4.4□□□□□ -1.71
CPSF3-204ENST00000489403 H7BZZ5 65 aa4.38□□□□□ -1.71
CPSF3-204ENST00000489403 COA5Q86WW8 74 aa4.38□□□□□ -1.71
CPSF3-204ENST00000489403 CCDC179H3BU77 68 aa4.37□□□□□ -1.71
CPSF3-204ENST00000489403 KRTAP12-1P59990 96 aa4.37□□□□□ -1.71
CPSF3-204ENST00000489403 SERP1Q9Y6X1 66 aa4.37□□□□□ -1.71
CPSF3-204ENST00000489403 SEC61GP60059 68 aa4.36□□□□□ -1.71
CPSF3-204ENST00000489403 KRTAP5-4Q6L8H1 288 aa4.36□□□□□ -1.71
CPSF3-204ENST00000489403 KRTAP4-3Q9BYR4 195 aa4.35□□□□□ -1.71
CPSF3-204ENST00000489403 A0A1B0GU33 70 aa4.33□□□□□ -1.72
CPSF3-204ENST00000489403 ATP5EP56381 51 aaPredicted RBP4.33□□□□□ -1.72
CPSF3-204ENST00000489403 KRTAP5-10Q6L8G5 202 aa4.33□□□□□ -1.72
CPSF3-204ENST00000489403 C10orf95Q9H7T3 257 aa4.29□□□□□ -1.72
CPSF3-204ENST00000489403 LCE3AQ5TA76 89 aa4.28□□□□□ -1.72
CPSF3-204ENST00000489403 TMEM258P61165 79 aa4.27□□□□□ -1.73
CPSF3-204ENST00000489403 SMIM26A0A096LP01 95 aa4.2□□□□□ -1.74
CPSF3-204ENST00000489403 A8MU10 97 aa4.2□□□□□ -1.74
CPSF3-204ENST00000489403 TNP1P09430 55 aa4.2□□□□□ -1.74
CPSF3-204ENST00000489403 RPS28P62857 69 aaKnown RBP4.2□□□□□ -1.74
CPSF3-204ENST00000489403 KRTAP5-7Q6L8G8 165 aa4.19□□□□□ -1.74
CPSF3-204ENST00000489403 V9GYY9 64 aa4.17□□□□□ -1.74
CPSF3-204ENST00000489403 A0A1B0GU69 56 aa4.15□□□□□ -1.75
CPSF3-204ENST00000489403 KRTAP20-2Q3LI61 65 aa4.13□□□□□ -1.75
CPSF3-204ENST00000489403 PRO0628Q9UI54 55 aa4.13□□□□□ -1.75
CPSF3-204ENST00000489403 PRR15LQ9BU68 103 aa4.12□□□□□ -1.75
CPSF3-204ENST00000489403 KRTAP12-3P60328 96 aa4.1□□□□□ -1.75
CPSF3-204ENST00000489403 KRTAP5-5Q701N2 237 aaPredicted RBP4.1□□□□□ -1.75
CPSF3-204ENST00000489403 LINC01558Q9Y6Z2 57 aa4.07□□□□□ -1.76
CPSF3-204ENST00000489403 SPRR5A0A1B0GTR4 108 aa4.06□□□□□ -1.76
CPSF3-204ENST00000489403 KRTAP12-4P60329 112 aa4.01□□□□□ -1.77
CPSF3-204ENST00000489403 Q1T7F1 81 aa3.97□□□□□ -1.77
CPSF3-204ENST00000489403 SYNE1Q8NF91 8797 aaKnown RBP3.96□□□□□ -1.77
CPSF3-204ENST00000489403 UQCR11O14957 56 aa3.96□□□□□ -1.78
CPSF3-204ENST00000489403 PMAIP1Q13794 54 aa3.93□□□□□ -1.78
CPSF3-204ENST00000489403 PSPHP1O15172 72 aa3.9□□□□□ -1.79
CPSF3-204ENST00000489403 MT3P25713 68 aa3.9□□□□□ -1.79
CPSF3-204ENST00000489403 PRAC1Q96KF2 57 aa3.88□□□□□ -1.79
CPSF3-204ENST00000489403 MIR22HGQ0VDD5 57 aa3.87□□□□□ -1.79
CPSF3-204ENST00000489403 KRTAP25-1Q3LHN0 102 aa3.84□□□□□ -1.79
CPSF3-204ENST00000489403 BRK1Q8WUW1 75 aa3.83□□□□□ -1.8
CPSF3-204ENST00000489403 A6NED7 52 aa3.82□□□□□ -1.8
CPSF3-204ENST00000489403 K7ERS5 55 aa3.82□□□□□ -1.8
CPSF3-204ENST00000489403 KRTAP5-2Q701N4 177 aa3.78□□□□□ -1.8
CPSF3-204ENST00000489403 LCE3CQ5T5A8 94 aa3.75□□□□□ -1.81
CPSF3-204ENST00000489403 MT1AP04731 61 aa3.73□□□□□ -1.81
CPSF3-204ENST00000489403 KRTAP6-1Q3LI64 71 aa3.73□□□□□ -1.81
CPSF3-204ENST00000489403 KTN1-AS1Q86SY8 53 aa3.73□□□□□ -1.81
CPSF3-204ENST00000489403 KRTAP5-8O75690 187 aa3.7□□□□□ -1.82
CPSF3-204ENST00000489403 CDC42SE1Q9NRR8 79 aa3.69□□□□□ -1.82
CPSF3-204ENST00000489403 NDUFAF8A1L188 74 aa3.67□□□□□ -1.82
CPSF3-204ENST00000489403 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.66□□□□□ -1.82
CPSF3-204ENST00000489403 MUC5BQ9HC84 5762 aaPredicted RBP3.64□□□□□ -1.83
CPSF3-204ENST00000489403 AHNAKQ09666 5890 aaKnown RBP3.63□□□□□ -1.83
CPSF3-204ENST00000489403 MUC5ACP98088 5654 aa3.63□□□□□ -1.83
CPSF3-204ENST00000489403 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
CPSF3-204ENST00000489403 KRTAP5-11Q6L8G4 156 aa3.62□□□□□ -1.83
CPSF3-204ENST00000489403 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
CPSF3-204ENST00000489403 KRTAP6-2Q3LI66 62 aa3.6□□□□□ -1.83
CPSF3-204ENST00000489403 KRTAP9-6A8MVA2 160 aa3.57□□□□□ -1.84
CPSF3-204ENST00000489403 ROMO1P60602 79 aa3.55□□□□□ -1.84
CPSF3-204ENST00000489403 KRTAP5-1Q6L8H4 278 aa3.44□□□□□ -1.86
CPSF3-204ENST00000489403 LCE1EQ5T753 118 aa3.43□□□□□ -1.86
CPSF3-204ENST00000489403 LUZP6Q538Z0 58 aa3.1□□□□□ -1.91
CPSF3-204ENST00000489403 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
CPSF3-204ENST00000489403 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
CPSF3-204ENST00000489403 LCE1BQ5T7P3 118 aa3.03□□□□□ -1.92
CPSF3-204ENST00000489403 LCE1CQ5T751 118 aa2.97□□□□□ -1.93
CPSF3-204ENST00000489403 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
CPSF3-204ENST00000489403 INE1O15225 51 aa2.62□□□□□ -1.99
CPSF3-204ENST00000489403 PHGR1C9JFL3 82 aa2.52□□□□□ -2.01
CPSF3-204ENST00000489403 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.02
CPSF3-204ENST00000489403 MUC19Q7Z5P9 8384 aa2.2□□□□□ -2.06
CPSF3-204ENST00000489403 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
CPSF3-204ENST00000489403 PRM1P04553 51 aa1.8□□□□□ -2.12
CPSF3-204ENST00000489403 MUC16Q8WXI7 14507 aa1.57□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 188 ms