RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	KRTAP5-4	Q6L8H1	288 aa		6.45	□□□□□ -1.38
HDAC6-231	ENST00000488905	KRTAP4-3	Q9BYR4	195 aa		6.43	□□□□□ -1.38
HDAC6-231	ENST00000488905	C10orf95	Q9H7T3	257 aa		6.4	□□□□□ -1.38
HDAC6-231	ENST00000488905	LCE3A	Q5TA76	89 aa		6.39	□□□□□ -1.39
HDAC6-231	ENST00000488905	KRTAP5-10	Q6L8G5	202 aa		6.38	□□□□□ -1.39
HDAC6-231	ENST00000488905	KRTAP4-11	Q9BYQ6	195 aa		6.34	□□□□□ -1.39
HDAC6-231	ENST00000488905	SMIM26	A0A096LP01	95 aa		6.33	□□□□□ -1.4
HDAC6-231	ENST00000488905	TNP1	P09430	55 aa		6.3	□□□□□ -1.4
HDAC6-231	ENST00000488905	ANAPC13	Q9BS18	74 aa		6.3	□□□□□ -1.4
HDAC6-231	ENST00000488905		A8MU10	97 aa		6.29	□□□□□ -1.4
HDAC6-231	ENST00000488905		A0A1B0GU69	56 aa		6.26	□□□□□ -1.41
HDAC6-231	ENST00000488905	KRTAP5-7	Q6L8G8	165 aa		6.17	□□□□□ -1.42
HDAC6-231	ENST00000488905	CCDC179	H3BU77	68 aa		6.16	□□□□□ -1.42
HDAC6-231	ENST00000488905	ATP5E	P56381	51 aa	Predicted RBP	6.16	□□□□□ -1.42
HDAC6-231	ENST00000488905	KRTAP5-3	Q6L8H2	238 aa		6.16	□□□□□ -1.42
HDAC6-231	ENST00000488905	KRTAP12-3	P60328	96 aa		6.13	□□□□□ -1.43
HDAC6-231	ENST00000488905	KRTAP20-2	Q3LI61	65 aa		6.11	□□□□□ -1.43
HDAC6-231	ENST00000488905	PRR15L	Q9BU68	103 aa		6.11	□□□□□ -1.43
HDAC6-231	ENST00000488905	KRTAP5-5	Q701N2	237 aa	Predicted RBP	6.08	□□□□□ -1.44
HDAC6-231	ENST00000488905	LINC01558	Q9Y6Z2	57 aa		6.05	□□□□□ -1.44
HDAC6-231	ENST00000488905	SPRR5	A0A1B0GTR4	108 aa		6.04	□□□□□ -1.44
HDAC6-231	ENST00000488905	TMEM258	P61165	79 aa		5.97	□□□□□ -1.45
HDAC6-231	ENST00000488905	KRTAP12-4	P60329	112 aa		5.96	□□□□□ -1.46
HDAC6-231	ENST00000488905	UQCR11	O14957	56 aa		5.9	□□□□□ -1.46
HDAC6-231	ENST00000488905	SYNE1	Q8NF91	8797 aa	Known RBP	5.87	□□□□□ -1.47
HDAC6-231	ENST00000488905	KRTAP19-4	Q3LI73	84 aa		5.85	□□□□□ -1.47
HDAC6-231	ENST00000488905	KRTAP25-1	Q3LHN0	102 aa		5.8	□□□□□ -1.48
HDAC6-231	ENST00000488905	MIR22HG	Q0VDD5	57 aa		5.74	□□□□□ -1.49
HDAC6-231	ENST00000488905		V9GYY9	64 aa		5.7	□□□□□ -1.5
HDAC6-231	ENST00000488905		K7ERS5	55 aa		5.66	□□□□□ -1.5
HDAC6-231	ENST00000488905		Q1T7F1	81 aa		5.64	□□□□□ -1.51
HDAC6-231	ENST00000488905	KRTAP15-1	Q3LI76	137 aa		5.62	□□□□□ -1.51
HDAC6-231	ENST00000488905	LCE3C	Q5T5A8	94 aa		5.61	□□□□□ -1.51
HDAC6-231	ENST00000488905	KRTAP5-2	Q701N4	177 aa		5.6	□□□□□ -1.51
HDAC6-231	ENST00000488905	PSPHP1	O15172	72 aa		5.59	□□□□□ -1.51
HDAC6-231	ENST00000488905	KRTAP23-1	A1A580	65 aa		5.56	□□□□□ -1.52
HDAC6-231	ENST00000488905	MT1A	P04731	61 aa		5.56	□□□□□ -1.52
HDAC6-231	ENST00000488905	KRTAP6-1	Q3LI64	71 aa		5.54	□□□□□ -1.52
HDAC6-231	ENST00000488905	KRTAP5-8	O75690	187 aa		5.46	□□□□□ -1.54
HDAC6-231	ENST00000488905	MUC5B	Q9HC84	5762 aa	Predicted RBP	5.46	□□□□□ -1.54
HDAC6-231	ENST00000488905	AHNAK	Q09666	5890 aa	Known RBP	5.46	□□□□□ -1.54
HDAC6-231	ENST00000488905		H3BS24	57 aa		5.43	□□□□□ -1.54
HDAC6-231	ENST00000488905	MUC5AC	P98088	5654 aa		5.43	□□□□□ -1.54
HDAC6-231	ENST00000488905		A6NED7	52 aa		5.42	□□□□□ -1.54
HDAC6-231	ENST00000488905	RPS28	P62857	69 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-231	ENST00000488905	KRTAP6-2	Q3LI66	62 aa		5.35	□□□□□ -1.55
HDAC6-231	ENST00000488905	CDC42SE1	Q9NRR8	79 aa		5.34	□□□□□ -1.55
HDAC6-231	ENST00000488905	OBSCN	Q5VST9	7968 aa		5.33	□□□□□ -1.56
HDAC6-231	ENST00000488905	KRTAP9-6	A8MVA2	160 aa		5.32	□□□□□ -1.56
HDAC6-231	ENST00000488905	ROMO1	P60602	79 aa		5.26	□□□□□ -1.57
HDAC6-231	ENST00000488905	PCP4	P48539	62 aa		5.17	□□□□□ -1.58
HDAC6-231	ENST00000488905	MT3	P25713	68 aa		5.08	□□□□□ -1.6
HDAC6-231	ENST00000488905	KRTAP5-1	Q6L8H4	278 aa		5.08	□□□□□ -1.6
HDAC6-231	ENST00000488905	LCE1E	Q5T753	118 aa		4.73	□□□□□ -1.65
HDAC6-231	ENST00000488905	BRK1	Q8WUW1	75 aa		4.6	□□□□□ -1.67
HDAC6-231	ENST00000488905	LCE1B	Q5T7P3	118 aa		4.49	□□□□□ -1.69
HDAC6-231	ENST00000488905	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.43	□□□□□ -1.7
HDAC6-231	ENST00000488905	LCE1C	Q5T751	118 aa		4.4	□□□□□ -1.71
HDAC6-231	ENST00000488905	PMAIP1	Q13794	54 aa		4.36	□□□□□ -1.71
HDAC6-231	ENST00000488905	KRTAP5-11	Q6L8G4	156 aa		4.33	□□□□□ -1.72
HDAC6-231	ENST00000488905	PRAC1	Q96KF2	57 aa		4.15	□□□□□ -1.75
HDAC6-231	ENST00000488905	PRO0628	Q9UI54	55 aa		4	□□□□□ -1.77
HDAC6-231	ENST00000488905	LCE3D	Q9BYE3	92 aa		3.98	□□□□□ -1.77
HDAC6-231	ENST00000488905	LCE1F	Q5T754	118 aa		3.97	□□□□□ -1.77
HDAC6-231	ENST00000488905	KTN1-AS1	Q86SY8	53 aa		3.82	□□□□□ -1.8
HDAC6-231	ENST00000488905	PHGR1	C9JFL3	82 aa		3.73	□□□□□ -1.81
HDAC6-231	ENST00000488905	KRTAP4-4	Q9BYR3	166 aa		3.72	□□□□□ -1.81
HDAC6-231	ENST00000488905	LCE3E	Q5T5B0	92 aa		3.69	□□□□□ -1.82
HDAC6-231	ENST00000488905	KRTAP21-2	Q3LI59	83 aa		3.65	□□□□□ -1.83
HDAC6-231	ENST00000488905	SVIP	Q8NHG7	77 aa		3.62	□□□□□ -1.83
HDAC6-231	ENST00000488905	LUZP6	Q538Z0	58 aa		3.59	□□□□□ -1.83
HDAC6-231	ENST00000488905	MUC19	Q7Z5P9	8384 aa		3.3	□□□□□ -1.88
HDAC6-231	ENST00000488905	KRTAP21-1	Q3LI58	79 aa		2.83	□□□□□ -1.96
HDAC6-231	ENST00000488905	NDUFAF8	A1L188	74 aa		2.76	□□□□□ -1.97
HDAC6-231	ENST00000488905	PRM1	P04553	51 aa		2.66	□□□□□ -1.98
HDAC6-231	ENST00000488905	MUC16	Q8WXI7	14507 aa		2.3	□□□□□ -2.04
HDAC6-231	ENST00000488905	INE1	O15225	51 aa		2.27	□□□□□ -2.05
HDAC6-231	ENST00000488905		A0A0A0MQY5	61 aa		2.21	□□□□□ -2.06

Retrieved 78 of 20,778 RNA–protein pairs in 75 ms