RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 H3BS24 57 aa5.16□□□□□ -1.58
CUX1-209ENST00000487284 MT1EP04732 61 aa5.15□□□□□ -1.59
CUX1-209ENST00000487284 SPRR5A0A1B0GTR4 108 aa5.11□□□□□ -1.59
CUX1-209ENST00000487284 MDN1Q9NU22 5596 aa5.09□□□□□ -1.59
CUX1-209ENST00000487284 LCE1AQ5T7P2 110 aa5.04□□□□□ -1.6
CUX1-209ENST00000487284 MT1LQ93083 61 aa5.04□□□□□ -1.6
CUX1-209ENST00000487284 SPRR2EP22531 72 aa5.03□□□□□ -1.6
CUX1-209ENST00000487284 SPRR2BP35325 72 aa5.03□□□□□ -1.6
CUX1-209ENST00000487284 SPRR2AP35326 72 aa5.03□□□□□ -1.6
CUX1-209ENST00000487284 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
CUX1-209ENST00000487284 LCE3CQ5T5A8 94 aa5□□□□□ -1.61
CUX1-209ENST00000487284 KRTAP20-1Q3LI63 56 aa4.99□□□□□ -1.61
CUX1-209ENST00000487284 KRTAP19-3Q7Z4W3 81 aa4.99□□□□□ -1.61
CUX1-209ENST00000487284 LCE5AQ5TCM9 118 aa4.94□□□□□ -1.62
CUX1-209ENST00000487284 MT1GP13640 62 aa4.92□□□□□ -1.62
CUX1-209ENST00000487284 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
CUX1-209ENST00000487284 MT1MQ8N339 61 aa4.87□□□□□ -1.63
CUX1-209ENST00000487284 KRTAP4-7Q9BYR0 210 aa4.87□□□□□ -1.63
CUX1-209ENST00000487284 SPRR2DP22532 72 aa4.85□□□□□ -1.63
CUX1-209ENST00000487284 NDUFAF8A1L188 74 aa4.84□□□□□ -1.63
CUX1-209ENST00000487284 KRTAP2-3P0C7H8 128 aa4.82□□□□□ -1.64
CUX1-209ENST00000487284 KRTAP2-4Q9BYR9 128 aa4.82□□□□□ -1.64
CUX1-209ENST00000487284 KRTAP4-3Q9BYR4 195 aa4.78□□□□□ -1.64
CUX1-209ENST00000487284 KRTAP9-6A8MVA2 160 aa4.74□□□□□ -1.65
CUX1-209ENST00000487284 DSTQ03001 7570 aaKnown RBP4.73□□□□□ -1.65
CUX1-209ENST00000487284 LCE3BQ5TA77 95 aa4.68□□□□□ -1.66
CUX1-209ENST00000487284 KRTAP2-2Q9BYT5 123 aa4.66□□□□□ -1.66
CUX1-209ENST00000487284 KRTAP2-1Q9BYU5 128 aa4.66□□□□□ -1.66
CUX1-209ENST00000487284 A0A0A0MQY5 61 aa4.61□□□□□ -1.67
CUX1-209ENST00000487284 LOC100996750A0A140TA64 210 aa4.57□□□□□ -1.68
CUX1-209ENST00000487284 KRTAP5-5Q701N2 237 aaPredicted RBP4.41□□□□□ -1.7
CUX1-209ENST00000487284 KRTAP5-4Q6L8H1 288 aa4.33□□□□□ -1.72
CUX1-209ENST00000487284 KRTAP4-9Q9BYQ8 210 aa4.31□□□□□ -1.72
CUX1-209ENST00000487284 LCE4AQ5TA78 99 aa4.3□□□□□ -1.72
CUX1-209ENST00000487284 MT1AP04731 61 aa4.28□□□□□ -1.72
CUX1-209ENST00000487284 GPR98Q8WXG9 6306 aa4.26□□□□□ -1.73
CUX1-209ENST00000487284 SYNE1Q8NF91 8797 aaKnown RBP4.24□□□□□ -1.73
CUX1-209ENST00000487284 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
CUX1-209ENST00000487284 MT4P47944 62 aa4.23□□□□□ -1.73
CUX1-209ENST00000487284 LCE1DQ5T752 114 aa4.2□□□□□ -1.74
CUX1-209ENST00000487284 HMCN1Q96RW7 5635 aa4.18□□□□□ -1.74
CUX1-209ENST00000487284 KRTAP4-6Q9BYQ5 205 aa4.17□□□□□ -1.74
CUX1-209ENST00000487284 KRTAP12-4P60329 112 aa4.14□□□□□ -1.75
CUX1-209ENST00000487284 KRTAP20-2Q3LI61 65 aa4.06□□□□□ -1.76
CUX1-209ENST00000487284 AHNAK2Q8IVF2 5795 aa4.06□□□□□ -1.76
CUX1-209ENST00000487284 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
CUX1-209ENST00000487284 INE1O15225 51 aa4.01□□□□□ -1.77
CUX1-209ENST00000487284 KRTAP5-10Q6L8G5 202 aa3.96□□□□□ -1.78
CUX1-209ENST00000487284 KRTAP6-2Q3LI66 62 aa3.93□□□□□ -1.78
CUX1-209ENST00000487284 KRTAP5-3Q6L8H2 238 aa3.93□□□□□ -1.78
CUX1-209ENST00000487284 KRTAP5-2Q701N4 177 aa3.89□□□□□ -1.79
CUX1-209ENST00000487284 MT3P25713 68 aa3.86□□□□□ -1.79
CUX1-209ENST00000487284 KRTAP5-7Q6L8G8 165 aa3.79□□□□□ -1.8
CUX1-209ENST00000487284 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
CUX1-209ENST00000487284 OBSCNQ5VST9 7968 aa3.69□□□□□ -1.82
CUX1-209ENST00000487284 LCE3EQ5T5B0 92 aa3.66□□□□□ -1.82
CUX1-209ENST00000487284 KRTAP4-11Q9BYQ6 195 aa3.58□□□□□ -1.84
CUX1-209ENST00000487284 KRTAP5-8O75690 187 aa3.46□□□□□ -1.86
CUX1-209ENST00000487284 LCE1EQ5T753 118 aa3.4□□□□□ -1.87
CUX1-209ENST00000487284 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.87
CUX1-209ENST00000487284 MUC5BQ9HC84 5762 aaPredicted RBP3.37□□□□□ -1.87
CUX1-209ENST00000487284 MUC5ACP98088 5654 aa3.32□□□□□ -1.88
CUX1-209ENST00000487284 AHNAKQ09666 5890 aaKnown RBP3.32□□□□□ -1.88
CUX1-209ENST00000487284 PRM1P04553 51 aa3.22□□□□□ -1.89
CUX1-209ENST00000487284 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.9
CUX1-209ENST00000487284 KRTAP4-12Q9BQ66 201 aa3.21□□□□□ -1.9
CUX1-209ENST00000487284 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
CUX1-209ENST00000487284 KRTAP4-2Q9BYR5 136 aa3.21□□□□□ -1.9
CUX1-209ENST00000487284 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
CUX1-209ENST00000487284 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.95□□□□□ -1.94
CUX1-209ENST00000487284 KRTAP5-11Q6L8G4 156 aa2.83□□□□□ -1.96
CUX1-209ENST00000487284 KRTAP21-2Q3LI59 83 aa2.78□□□□□ -1.96
CUX1-209ENST00000487284 LCE1FQ5T754 118 aa2.61□□□□□ -1.99
CUX1-209ENST00000487284 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
CUX1-209ENST00000487284 PHGR1C9JFL3 82 aa2.43□□□□□ -2.02
CUX1-209ENST00000487284 MUC19Q7Z5P9 8384 aa2.26□□□□□ -2.05
CUX1-209ENST00000487284 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
CUX1-209ENST00000487284 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 83.8 ms