RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 KRTAP5-4Q6L8H1 288 aa6.92□□□□□ -1.3
SMPDL3A-202ENST00000487215 MT1LQ93083 61 aa6.88□□□□□ -1.31
SMPDL3A-202ENST00000487215 KRTAP12-1P59990 96 aa6.84□□□□□ -1.31
SMPDL3A-202ENST00000487215 KRTAP4-3Q9BYR4 195 aa6.84□□□□□ -1.31
SMPDL3A-202ENST00000487215 SMIM26A0A096LP01 95 aa6.79□□□□□ -1.32
SMPDL3A-202ENST00000487215 KRTAP5-7Q6L8G8 165 aa6.79□□□□□ -1.32
SMPDL3A-202ENST00000487215 KRTAP4-2Q9BYR5 136 aa6.77□□□□□ -1.33
SMPDL3A-202ENST00000487215 H7BZZ5 65 aa6.75□□□□□ -1.33
SMPDL3A-202ENST00000487215 A0A1B0GU69 56 aa6.74□□□□□ -1.33
SMPDL3A-202ENST00000487215 KRTAP5-3Q6L8H2 238 aa6.74□□□□□ -1.33
SMPDL3A-202ENST00000487215 SVIPQ8NHG7 77 aa6.71□□□□□ -1.34
SMPDL3A-202ENST00000487215 CCDC179H3BU77 68 aa6.7□□□□□ -1.34
SMPDL3A-202ENST00000487215 KRTAP4-11Q9BYQ6 195 aa6.68□□□□□ -1.34
SMPDL3A-202ENST00000487215 TNP1P09430 55 aa6.66□□□□□ -1.34
SMPDL3A-202ENST00000487215 ATP5EP56381 51 aaPredicted RBP6.65□□□□□ -1.34
SMPDL3A-202ENST00000487215 C10orf95Q9H7T3 257 aa6.65□□□□□ -1.34
SMPDL3A-202ENST00000487215 A8MU10 97 aa6.62□□□□□ -1.35
SMPDL3A-202ENST00000487215 LCE3AQ5TA76 89 aa6.61□□□□□ -1.35
SMPDL3A-202ENST00000487215 TMEM258P61165 79 aa6.59□□□□□ -1.35
SMPDL3A-202ENST00000487215 KRTAP20-2Q3LI61 65 aa6.57□□□□□ -1.36
SMPDL3A-202ENST00000487215 PRR15LQ9BU68 103 aa6.54□□□□□ -1.36
SMPDL3A-202ENST00000487215 PCP4P48539 62 aa6.53□□□□□ -1.36
SMPDL3A-202ENST00000487215 SPRR5A0A1B0GTR4 108 aa6.48□□□□□ -1.37
SMPDL3A-202ENST00000487215 KRTAP5-5Q701N2 237 aaPredicted RBP6.44□□□□□ -1.38
SMPDL3A-202ENST00000487215 KRTAP12-3P60328 96 aa6.38□□□□□ -1.39
SMPDL3A-202ENST00000487215 KRTAP12-4P60329 112 aa6.36□□□□□ -1.39
SMPDL3A-202ENST00000487215 LINC01558Q9Y6Z2 57 aa6.35□□□□□ -1.39
SMPDL3A-202ENST00000487215 SYNE1Q8NF91 8797 aaKnown RBP6.34□□□□□ -1.4
SMPDL3A-202ENST00000487215 UQCR11O14957 56 aa6.28□□□□□ -1.4
SMPDL3A-202ENST00000487215 RPS28P62857 69 aaKnown RBP6.21□□□□□ -1.42
SMPDL3A-202ENST00000487215 V9GYY9 64 aa6.21□□□□□ -1.42
SMPDL3A-202ENST00000487215 KRTAP25-1Q3LHN0 102 aa6.19□□□□□ -1.42
SMPDL3A-202ENST00000487215 K7ERS5 55 aa6.11□□□□□ -1.43
SMPDL3A-202ENST00000487215 Q1T7F1 81 aa6.1□□□□□ -1.43
SMPDL3A-202ENST00000487215 MIR22HGQ0VDD5 57 aa6.09□□□□□ -1.43
SMPDL3A-202ENST00000487215 AHNAKQ09666 5890 aaKnown RBP5.98□□□□□ -1.45
SMPDL3A-202ENST00000487215 KRTAP5-2Q701N4 177 aa5.98□□□□□ -1.45
SMPDL3A-202ENST00000487215 KRTAP23-1A1A580 65 aa5.97□□□□□ -1.45
SMPDL3A-202ENST00000487215 PSPHP1O15172 72 aa5.96□□□□□ -1.46
SMPDL3A-202ENST00000487215 MUC5ACP98088 5654 aa5.95□□□□□ -1.46
SMPDL3A-202ENST00000487215 KRTAP5-8O75690 187 aa5.92□□□□□ -1.46
SMPDL3A-202ENST00000487215 MUC5BQ9HC84 5762 aaPredicted RBP5.91□□□□□ -1.46
SMPDL3A-202ENST00000487215 KRTAP15-1Q3LI76 137 aa5.91□□□□□ -1.46
SMPDL3A-202ENST00000487215 A6NED7 52 aa5.85□□□□□ -1.47
SMPDL3A-202ENST00000487215 LCE3CQ5T5A8 94 aa5.85□□□□□ -1.47
SMPDL3A-202ENST00000487215 MT1AP04731 61 aa5.84□□□□□ -1.47
SMPDL3A-202ENST00000487215 KRTAP6-1Q3LI64 71 aa5.84□□□□□ -1.47
SMPDL3A-202ENST00000487215 OBSCNQ5VST9 7968 aa5.73□□□□□ -1.49
SMPDL3A-202ENST00000487215 CDC42SE1Q9NRR8 79 aa5.7□□□□□ -1.5
SMPDL3A-202ENST00000487215 KRTAP6-2Q3LI66 62 aa5.67□□□□□ -1.5
SMPDL3A-202ENST00000487215 ROMO1P60602 79 aa5.58□□□□□ -1.52
SMPDL3A-202ENST00000487215 KRTAP9-6A8MVA2 160 aa5.51□□□□□ -1.53
SMPDL3A-202ENST00000487215 BRK1Q8WUW1 75 aa5.51□□□□□ -1.53
SMPDL3A-202ENST00000487215 KRTAP5-1Q6L8H4 278 aa5.45□□□□□ -1.54
SMPDL3A-202ENST00000487215 A0A0A0MQY5 61 aa5.37□□□□□ -1.55
SMPDL3A-202ENST00000487215 MT3P25713 68 aa5.35□□□□□ -1.55
SMPDL3A-202ENST00000487215 PRO0628Q9UI54 55 aa5.25□□□□□ -1.57
SMPDL3A-202ENST00000487215 PMAIP1Q13794 54 aa5.22□□□□□ -1.57
SMPDL3A-202ENST00000487215 LCE1EQ5T753 118 aa5.02□□□□□ -1.61
SMPDL3A-202ENST00000487215 KTN1-AS1Q86SY8 53 aa4.92□□□□□ -1.62
SMPDL3A-202ENST00000487215 PRAC1Q96KF2 57 aa4.82□□□□□ -1.64
SMPDL3A-202ENST00000487215 LCE1BQ5T7P3 118 aa4.79□□□□□ -1.64
SMPDL3A-202ENST00000487215 LCE1CQ5T751 118 aa4.67□□□□□ -1.66
SMPDL3A-202ENST00000487215 KRTAP5-11Q6L8G4 156 aa4.52□□□□□ -1.69
SMPDL3A-202ENST00000487215 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.46□□□□□ -1.7
SMPDL3A-202ENST00000487215 LCE1FQ5T754 118 aa4.26□□□□□ -1.73
SMPDL3A-202ENST00000487215 LCE3DQ9BYE3 92 aa4.2□□□□□ -1.74
SMPDL3A-202ENST00000487215 LUZP6Q538Z0 58 aa4.17□□□□□ -1.74
SMPDL3A-202ENST00000487215 PHGR1C9JFL3 82 aa4.1□□□□□ -1.75
SMPDL3A-202ENST00000487215 LCE3EQ5T5B0 92 aa3.93□□□□□ -1.78
SMPDL3A-202ENST00000487215 NDUFAF8A1L188 74 aa3.88□□□□□ -1.79
SMPDL3A-202ENST00000487215 KRTAP21-2Q3LI59 83 aa3.86□□□□□ -1.79
SMPDL3A-202ENST00000487215 KRTAP4-4Q9BYR3 166 aa3.76□□□□□ -1.81
SMPDL3A-202ENST00000487215 MUC19Q7Z5P9 8384 aa3.56□□□□□ -1.84
SMPDL3A-202ENST00000487215 INE1O15225 51 aa3.16□□□□□ -1.9
SMPDL3A-202ENST00000487215 KRTAP21-1Q3LI58 79 aa3.11□□□□□ -1.91
SMPDL3A-202ENST00000487215 PRM1P04553 51 aa2.8□□□□□ -1.96
SMPDL3A-202ENST00000487215 MUC16Q8WXI7 14507 aa2.51□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 722.1 ms