RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 KRTAP5-3Q6L8H2 238 aa4.66□□□□□ -1.66
COL3A1-206ENST00000487010 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
COL3A1-206ENST00000487010 KRTAP19-5Q3LI72 72 aa4.53□□□□□ -1.68
COL3A1-206ENST00000487010 KRTAP19-4Q3LI73 84 aa4.52□□□□□ -1.69
COL3A1-206ENST00000487010 LCE3CQ5T5A8 94 aa4.51□□□□□ -1.69
COL3A1-206ENST00000487010 KRTAP9-7A8MTY7 169 aa4.48□□□□□ -1.69
COL3A1-206ENST00000487010 LCE5AQ5TCM9 118 aa4.42□□□□□ -1.7
COL3A1-206ENST00000487010 KRTAP9-6A8MVA2 160 aa4.36□□□□□ -1.71
COL3A1-206ENST00000487010 KMT2DO14686 5537 aa4.33□□□□□ -1.72
COL3A1-206ENST00000487010 USH2AO75445 5202 aa4.32□□□□□ -1.72
COL3A1-206ENST00000487010 KRTAP19-7Q3SYF9 63 aa4.29□□□□□ -1.72
COL3A1-206ENST00000487010 KRTAP2-3P0C7H8 128 aa4.26□□□□□ -1.73
COL3A1-206ENST00000487010 KRTAP2-4Q9BYR9 128 aa4.26□□□□□ -1.73
COL3A1-206ENST00000487010 KRTAP2-1Q9BYU5 128 aa4.26□□□□□ -1.73
COL3A1-206ENST00000487010 MT1LQ93083 61 aa4.18□□□□□ -1.74
COL3A1-206ENST00000487010 MT1EP04732 61 aa4.15□□□□□ -1.74
COL3A1-206ENST00000487010 SSPOA2VEC9 5147 aa4.06□□□□□ -1.76
COL3A1-206ENST00000487010 KRTAP19-6Q3LI70 58 aa3.98□□□□□ -1.77
COL3A1-206ENST00000487010 KRTAP4-3Q9BYR4 195 aa3.94□□□□□ -1.78
COL3A1-206ENST00000487010 MT1GP13640 62 aa3.91□□□□□ -1.78
COL3A1-206ENST00000487010 MT1MQ8N339 61 aa3.87□□□□□ -1.79
COL3A1-206ENST00000487010 KRTAP19-3Q7Z4W3 81 aa3.85□□□□□ -1.79
COL3A1-206ENST00000487010 FCGBPQ9Y6R7 5405 aaPredicted RBP3.81□□□□□ -1.8
COL3A1-206ENST00000487010 CRCT1Q9UGL9 99 aa3.8□□□□□ -1.8
COL3A1-206ENST00000487010 KRTAP12-4P60329 112 aa3.79□□□□□ -1.8
COL3A1-206ENST00000487010 FSIP2Q5CZC0 6907 aa3.79□□□□□ -1.8
COL3A1-206ENST00000487010 MUC12Q9UKN1 5478 aa3.76□□□□□ -1.81
COL3A1-206ENST00000487010 SPRR2FQ96RM1 72 aa3.66□□□□□ -1.82
COL3A1-206ENST00000487010 HMCN1Q96RW7 5635 aa3.62□□□□□ -1.83
COL3A1-206ENST00000487010 MT1AP04731 61 aa3.6□□□□□ -1.83
COL3A1-206ENST00000487010 DSTQ03001 7570 aaKnown RBP3.58□□□□□ -1.84
COL3A1-206ENST00000487010 KRTAP6-1Q3LI64 71 aa3.55□□□□□ -1.84
COL3A1-206ENST00000487010 MACF1Q9UPN3 7388 aaKnown RBP3.49□□□□□ -1.85
COL3A1-206ENST00000487010 LCE3DQ9BYE3 92 aa3.49□□□□□ -1.85
COL3A1-206ENST00000487010 LCE3EQ5T5B0 92 aa3.46□□□□□ -1.86
COL3A1-206ENST00000487010 SYNE1Q8NF91 8797 aaKnown RBP3.44□□□□□ -1.86
COL3A1-206ENST00000487010 KRTAP5-5Q701N2 237 aaPredicted RBP3.42□□□□□ -1.86
COL3A1-206ENST00000487010 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.4□□□□□ -1.86
COL3A1-206ENST00000487010 LCE1AQ5T7P2 110 aa3.4□□□□□ -1.87
COL3A1-206ENST00000487010 PRM1P04553 51 aa3.37□□□□□ -1.87
COL3A1-206ENST00000487010 MDN1Q9NU22 5596 aa3.36□□□□□ -1.87
COL3A1-206ENST00000487010 SYNE2Q8WXH0 6885 aaKnown RBP3.35□□□□□ -1.87
COL3A1-206ENST00000487010 KRTAP5-9P26371 169 aa3.35□□□□□ -1.87
COL3A1-206ENST00000487010 SPRR2EP22531 72 aa3.3□□□□□ -1.88
COL3A1-206ENST00000487010 SPRR2BP35325 72 aa3.3□□□□□ -1.88
COL3A1-206ENST00000487010 SPRR2AP35326 72 aa3.3□□□□□ -1.88
COL3A1-206ENST00000487010 KRTAP6-2Q3LI66 62 aa3.24□□□□□ -1.89
COL3A1-206ENST00000487010 KRTAP5-11Q6L8G4 156 aa3.18□□□□□ -1.9
COL3A1-206ENST00000487010 SPRR2DP22532 72 aa3.15□□□□□ -1.9
COL3A1-206ENST00000487010 MT3P25713 68 aa3.14□□□□□ -1.91
COL3A1-206ENST00000487010 KRTAP6-3Q3LI67 103 aa3.1□□□□□ -1.91
COL3A1-206ENST00000487010 KRTAP2-2Q9BYT5 123 aa2.99□□□□□ -1.93
COL3A1-206ENST00000487010 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
COL3A1-206ENST00000487010 KRTAP20-1Q3LI63 56 aa2.96□□□□□ -1.94
COL3A1-206ENST00000487010 OBSCNQ5VST9 7968 aa2.94□□□□□ -1.94
COL3A1-206ENST00000487010 KRTAP5-4Q6L8H1 288 aa2.93□□□□□ -1.94
COL3A1-206ENST00000487010 LCE1EQ5T753 118 aa2.92□□□□□ -1.94
COL3A1-206ENST00000487010 KRTAP5-1Q6L8H4 278 aa2.91□□□□□ -1.94
COL3A1-206ENST00000487010 NEBP20929 6669 aa2.86□□□□□ -1.95
COL3A1-206ENST00000487010 KRTAP4-4Q9BYR3 166 aa2.84□□□□□ -1.95
COL3A1-206ENST00000487010 MT4P47944 62 aa2.78□□□□□ -1.96
COL3A1-206ENST00000487010 KRTAP5-2Q701N4 177 aa2.77□□□□□ -1.97
COL3A1-206ENST00000487010 KRTAP20-2Q3LI61 65 aa2.76□□□□□ -1.97
COL3A1-206ENST00000487010 MUC5ACP98088 5654 aa2.64□□□□□ -1.99
COL3A1-206ENST00000487010 KRTAP5-8O75690 187 aa2.54□□□□□ -2
COL3A1-206ENST00000487010 KRTAP5-10Q6L8G5 202 aa2.54□□□□□ -2
COL3A1-206ENST00000487010 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
COL3A1-206ENST00000487010 LCE1FQ5T754 118 aa2.45□□□□□ -2.02
COL3A1-206ENST00000487010 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
COL3A1-206ENST00000487010 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
COL3A1-206ENST00000487010 LCE1CQ5T751 118 aa2.39□□□□□ -2.03
COL3A1-206ENST00000487010 AHNAKQ09666 5890 aaKnown RBP2.37□□□□□ -2.03
COL3A1-206ENST00000487010 AHNAK2Q8IVF2 5795 aa2.37□□□□□ -2.03
COL3A1-206ENST00000487010 KRTAP21-2Q3LI59 83 aa2.29□□□□□ -2.04
COL3A1-206ENST00000487010 KRTAP21-1Q3LI58 79 aa2.15□□□□□ -2.07
COL3A1-206ENST00000487010 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
COL3A1-206ENST00000487010 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
COL3A1-206ENST00000487010 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 54.1 ms