RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 LCE3CQ5T5A8 94 aa3.94□□□□□ -1.78
CCDC171-208ENST00000486641 KRTAP19-5Q3LI72 72 aa3.89□□□□□ -1.79
CCDC171-208ENST00000486641 KRTAP9-6A8MVA2 160 aa3.86□□□□□ -1.79
CCDC171-208ENST00000486641 KRTAP2-3P0C7H8 128 aa3.81□□□□□ -1.8
CCDC171-208ENST00000486641 KRTAP2-4Q9BYR9 128 aa3.81□□□□□ -1.8
CCDC171-208ENST00000486641 KRTAP2-1Q9BYU5 128 aa3.81□□□□□ -1.8
CCDC171-208ENST00000486641 KRTAP9-3Q9BYQ3 159 aa3.8□□□□□ -1.8
CCDC171-208ENST00000486641 KMT2DO14686 5537 aa3.76□□□□□ -1.81
CCDC171-208ENST00000486641 KRTAP19-4Q3LI73 84 aa3.69□□□□□ -1.82
CCDC171-208ENST00000486641 KRTAP19-7Q3SYF9 63 aa3.62□□□□□ -1.83
CCDC171-208ENST00000486641 LCE4AQ5TA78 99 aa3.62□□□□□ -1.83
CCDC171-208ENST00000486641 USH2AO75445 5202 aa3.61□□□□□ -1.83
CCDC171-208ENST00000486641 MT1LQ93083 61 aa3.54□□□□□ -1.84
CCDC171-208ENST00000486641 KRTAP9-7A8MTY7 169 aa3.52□□□□□ -1.85
CCDC171-208ENST00000486641 MT1EP04732 61 aa3.48□□□□□ -1.85
CCDC171-208ENST00000486641 KRTAP12-4P60329 112 aa3.47□□□□□ -1.85
CCDC171-208ENST00000486641 LCE5AQ5TCM9 118 aa3.45□□□□□ -1.86
CCDC171-208ENST00000486641 HMCN1Q96RW7 5635 aa3.43□□□□□ -1.86
CCDC171-208ENST00000486641 KRTAP4-3Q9BYR4 195 aa3.38□□□□□ -1.87
CCDC171-208ENST00000486641 MT1GP13640 62 aa3.37□□□□□ -1.87
CCDC171-208ENST00000486641 CRCT1Q9UGL9 99 aa3.33□□□□□ -1.88
CCDC171-208ENST00000486641 KRTAP19-6Q3LI70 58 aa3.28□□□□□ -1.88
CCDC171-208ENST00000486641 FSIP2Q5CZC0 6907 aa3.28□□□□□ -1.88
CCDC171-208ENST00000486641 SSPOA2VEC9 5147 aa3.28□□□□□ -1.89
CCDC171-208ENST00000486641 MT1MQ8N339 61 aa3.24□□□□□ -1.89
CCDC171-208ENST00000486641 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
CCDC171-208ENST00000486641 KRTAP19-3Q7Z4W3 81 aa3.18□□□□□ -1.9
CCDC171-208ENST00000486641 MUC12Q9UKN1 5478 aa3.17□□□□□ -1.9
CCDC171-208ENST00000486641 FCGBPQ9Y6R7 5405 aaPredicted RBP3.16□□□□□ -1.9
CCDC171-208ENST00000486641 SYNE1Q8NF91 8797 aaKnown RBP3.14□□□□□ -1.91
CCDC171-208ENST00000486641 MT1AP04731 61 aa3.13□□□□□ -1.91
CCDC171-208ENST00000486641 DSTQ03001 7570 aaKnown RBP3.13□□□□□ -1.91
CCDC171-208ENST00000486641 PRM1P04553 51 aa3.11□□□□□ -1.91
CCDC171-208ENST00000486641 KRTAP5-5Q701N2 237 aaPredicted RBP3.1□□□□□ -1.91
CCDC171-208ENST00000486641 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
CCDC171-208ENST00000486641 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
CCDC171-208ENST00000486641 LCE1AQ5T7P2 110 aa3.04□□□□□ -1.92
CCDC171-208ENST00000486641 KRTAP6-1Q3LI64 71 aa3.03□□□□□ -1.92
CCDC171-208ENST00000486641 GPR98Q8WXG9 6306 aa3.02□□□□□ -1.93
CCDC171-208ENST00000486641 MACF1Q9UPN3 7388 aaKnown RBP3□□□□□ -1.93
CCDC171-208ENST00000486641 LCE1FQ5T754 118 aa2.97□□□□□ -1.93
CCDC171-208ENST00000486641 KRTAP6-3Q3LI67 103 aa2.94□□□□□ -1.94
CCDC171-208ENST00000486641 KRTAP5-9P26371 169 aa2.93□□□□□ -1.94
CCDC171-208ENST00000486641 SPRR2FQ96RM1 72 aa2.93□□□□□ -1.94
CCDC171-208ENST00000486641 KRTAP6-2Q3LI66 62 aa2.91□□□□□ -1.94
CCDC171-208ENST00000486641 SYNE2Q8WXH0 6885 aaKnown RBP2.91□□□□□ -1.94
CCDC171-208ENST00000486641 KRTAP20-1Q3LI63 56 aa2.91□□□□□ -1.94
CCDC171-208ENST00000486641 NEBP20929 6669 aa2.82□□□□□ -1.96
CCDC171-208ENST00000486641 MT3P25713 68 aa2.81□□□□□ -1.96
CCDC171-208ENST00000486641 KRTAP2-2Q9BYT5 123 aa2.8□□□□□ -1.96
CCDC171-208ENST00000486641 SPRR2EP22531 72 aa2.77□□□□□ -1.97
CCDC171-208ENST00000486641 SPRR2BP35325 72 aa2.77□□□□□ -1.97
CCDC171-208ENST00000486641 SPRR2AP35326 72 aa2.77□□□□□ -1.97
CCDC171-208ENST00000486641 MDN1Q9NU22 5596 aa2.75□□□□□ -1.97
CCDC171-208ENST00000486641 KRTAP5-4Q6L8H1 288 aa2.75□□□□□ -1.97
CCDC171-208ENST00000486641 OBSCNQ5VST9 7968 aa2.71□□□□□ -1.98
CCDC171-208ENST00000486641 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
CCDC171-208ENST00000486641 SPRR2DP22532 72 aa2.67□□□□□ -1.98
CCDC171-208ENST00000486641 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
CCDC171-208ENST00000486641 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
CCDC171-208ENST00000486641 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
CCDC171-208ENST00000486641 LCE1EQ5T753 118 aa2.59□□□□□ -2
CCDC171-208ENST00000486641 KRTAP5-7Q6L8G8 165 aa2.44□□□□□ -2.02
CCDC171-208ENST00000486641 KRTAP5-2Q701N4 177 aa2.43□□□□□ -2.02
CCDC171-208ENST00000486641 AHNAKQ09666 5890 aaKnown RBP2.42□□□□□ -2.02
CCDC171-208ENST00000486641 AHNAK2Q8IVF2 5795 aa2.36□□□□□ -2.03
CCDC171-208ENST00000486641 MT4P47944 62 aa2.33□□□□□ -2.04
CCDC171-208ENST00000486641 KRTAP5-10Q6L8G5 202 aa2.3□□□□□ -2.04
CCDC171-208ENST00000486641 MUC5ACP98088 5654 aa2.29□□□□□ -2.04
CCDC171-208ENST00000486641 KRTAP20-2Q3LI61 65 aa2.25□□□□□ -2.05
CCDC171-208ENST00000486641 KRTAP5-8O75690 187 aa2.2□□□□□ -2.06
CCDC171-208ENST00000486641 LCE1BQ5T7P3 118 aa2.11□□□□□ -2.07
CCDC171-208ENST00000486641 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
CCDC171-208ENST00000486641 LCE1CQ5T751 118 aa1.94□□□□□ -2.1
CCDC171-208ENST00000486641 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
CCDC171-208ENST00000486641 MUC19Q7Z5P9 8384 aa1.87□□□□□ -2.11
CCDC171-208ENST00000486641 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
CCDC171-208ENST00000486641 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 42 ms