RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 V9GYY9 64 aa6.2□□□□□ -1.42
COL6A1-204ENST00000486023 Q1T7F1 81 aa6.18□□□□□ -1.42
COL6A1-204ENST00000486023 MIR22HGQ0VDD5 57 aa6.17□□□□□ -1.42
COL6A1-204ENST00000486023 KRTAP4-3Q9BYR4 195 aa6.17□□□□□ -1.42
COL6A1-204ENST00000486023 PCP4P48539 62 aa6.16□□□□□ -1.42
COL6A1-204ENST00000486023 RPS28P62857 69 aaKnown RBP6.15□□□□□ -1.42
COL6A1-204ENST00000486023 PSPHP1O15172 72 aa6.1□□□□□ -1.43
COL6A1-204ENST00000486023 KRTAP12-3P60328 96 aa6.1□□□□□ -1.43
COL6A1-204ENST00000486023 MT4P47944 62 aa6.08□□□□□ -1.44
COL6A1-204ENST00000486023 LCE1DQ5T752 114 aa6.08□□□□□ -1.44
COL6A1-204ENST00000486023 K7ERS5 55 aa6.07□□□□□ -1.44
COL6A1-204ENST00000486023 GPR98Q8WXG9 6306 aa6.05□□□□□ -1.44
COL6A1-204ENST00000486023 LCE4AQ5TA78 99 aa6.04□□□□□ -1.44
COL6A1-204ENST00000486023 KRTAP4-7Q9BYR0 210 aa6.04□□□□□ -1.44
COL6A1-204ENST00000486023 KRTAP25-1Q3LHN0 102 aa6□□□□□ -1.45
COL6A1-204ENST00000486023 HMCN1Q96RW7 5635 aa5.97□□□□□ -1.45
COL6A1-204ENST00000486023 A6NED7 52 aa5.88□□□□□ -1.47
COL6A1-204ENST00000486023 KRTAP5-4Q6L8H1 288 aa5.88□□□□□ -1.47
COL6A1-204ENST00000486023 KRTAP4-6Q9BYQ5 205 aa5.86□□□□□ -1.47
COL6A1-204ENST00000486023 LOC100996750A0A140TA64 210 aa5.73□□□□□ -1.49
COL6A1-204ENST00000486023 CDC42SE1Q9NRR8 79 aa5.73□□□□□ -1.49
COL6A1-204ENST00000486023 AHNAK2Q8IVF2 5795 aa5.71□□□□□ -1.5
COL6A1-204ENST00000486023 KRTAP23-1A1A580 65 aa5.7□□□□□ -1.5
COL6A1-204ENST00000486023 KRTAP15-1Q3LI76 137 aa5.7□□□□□ -1.5
COL6A1-204ENST00000486023 KRTAP5-5Q701N2 237 aaPredicted RBP5.67□□□□□ -1.5
COL6A1-204ENST00000486023 ROMO1P60602 79 aa5.63□□□□□ -1.51
COL6A1-204ENST00000486023 KRTAP19-4Q3LI73 84 aa5.63□□□□□ -1.51
COL6A1-204ENST00000486023 KRTAP20-2Q3LI61 65 aa5.61□□□□□ -1.51
COL6A1-204ENST00000486023 LCE3CQ5T5A8 94 aa5.61□□□□□ -1.51
COL6A1-204ENST00000486023 SYNE1Q8NF91 8797 aaKnown RBP5.61□□□□□ -1.51
COL6A1-204ENST00000486023 KRTAP12-4P60329 112 aa5.6□□□□□ -1.51
COL6A1-204ENST00000486023 KRTAP5-10Q6L8G5 202 aa5.58□□□□□ -1.52
COL6A1-204ENST00000486023 SPRR5A0A1B0GTR4 108 aa5.53□□□□□ -1.52
COL6A1-204ENST00000486023 KRTAP5-3Q6L8H2 238 aa5.49□□□□□ -1.53
COL6A1-204ENST00000486023 KRTAP5-7Q6L8G8 165 aa5.34□□□□□ -1.55
COL6A1-204ENST00000486023 KRTAP6-1Q3LI64 71 aa5.33□□□□□ -1.56
COL6A1-204ENST00000486023 MT1AP04731 61 aa5.32□□□□□ -1.56
COL6A1-204ENST00000486023 KRTAP9-6A8MVA2 160 aa5.28□□□□□ -1.56
COL6A1-204ENST00000486023 BRK1Q8WUW1 75 aa5.23□□□□□ -1.57
COL6A1-204ENST00000486023 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
COL6A1-204ENST00000486023 KRTAP5-2Q701N4 177 aa5.14□□□□□ -1.59
COL6A1-204ENST00000486023 KRTAP4-11Q9BYQ6 195 aa5.12□□□□□ -1.59
COL6A1-204ENST00000486023 KRTAP6-2Q3LI66 62 aa5.11□□□□□ -1.59
COL6A1-204ENST00000486023 OBSCNQ5VST9 7968 aa5.01□□□□□ -1.61
COL6A1-204ENST00000486023 PMAIP1Q13794 54 aa4.99□□□□□ -1.61
COL6A1-204ENST00000486023 KRTAP5-8O75690 187 aa4.93□□□□□ -1.62
COL6A1-204ENST00000486023 MT3P25713 68 aa4.9□□□□□ -1.63
COL6A1-204ENST00000486023 PRO0628Q9UI54 55 aa4.87□□□□□ -1.63
COL6A1-204ENST00000486023 KRTAP9-9Q9BYP9 154 aa4.72□□□□□ -1.65
COL6A1-204ENST00000486023 MUC5BQ9HC84 5762 aaPredicted RBP4.72□□□□□ -1.65
COL6A1-204ENST00000486023 AHNAKQ09666 5890 aaKnown RBP4.71□□□□□ -1.66
COL6A1-204ENST00000486023 MUC5ACP98088 5654 aa4.68□□□□□ -1.66
COL6A1-204ENST00000486023 PRAC1Q96KF2 57 aa4.67□□□□□ -1.66
COL6A1-204ENST00000486023 KRTAP5-1Q6L8H4 278 aa4.63□□□□□ -1.67
COL6A1-204ENST00000486023 KTN1-AS1Q86SY8 53 aa4.57□□□□□ -1.68
COL6A1-204ENST00000486023 LCE1EQ5T753 118 aa4.42□□□□□ -1.7
COL6A1-204ENST00000486023 LCE1BQ5T7P3 118 aa4.31□□□□□ -1.72
COL6A1-204ENST00000486023 KRTAP4-2Q9BYR5 136 aa4.2□□□□□ -1.74
COL6A1-204ENST00000486023 SVIPQ8NHG7 77 aa4.19□□□□□ -1.74
COL6A1-204ENST00000486023 LCE1CQ5T751 118 aa4.12□□□□□ -1.75
COL6A1-204ENST00000486023 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
COL6A1-204ENST00000486023 LUZP6Q538Z0 58 aa3.97□□□□□ -1.77
COL6A1-204ENST00000486023 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
COL6A1-204ENST00000486023 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
COL6A1-204ENST00000486023 KRTAP5-11Q6L8G4 156 aa3.71□□□□□ -1.82
COL6A1-204ENST00000486023 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.7□□□□□ -1.82
COL6A1-204ENST00000486023 LCE1FQ5T754 118 aa3.6□□□□□ -1.83
COL6A1-204ENST00000486023 KRTAP21-2Q3LI59 83 aa3.47□□□□□ -1.85
COL6A1-204ENST00000486023 NDUFAF8A1L188 74 aa3.35□□□□□ -1.87
COL6A1-204ENST00000486023 PHGR1C9JFL3 82 aa3.31□□□□□ -1.88
COL6A1-204ENST00000486023 KRTAP4-4Q9BYR3 166 aa3.29□□□□□ -1.88
COL6A1-204ENST00000486023 MUC19Q7Z5P9 8384 aa3.09□□□□□ -1.91
COL6A1-204ENST00000486023 PRM1P04553 51 aa2.91□□□□□ -1.94
COL6A1-204ENST00000486023 INE1O15225 51 aa2.86□□□□□ -1.95
COL6A1-204ENST00000486023 A0A0A0MQY5 61 aa2.8□□□□□ -1.96
COL6A1-204ENST00000486023 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
COL6A1-204ENST00000486023 MUC16Q8WXI7 14507 aa2.12□□□□□ -2.07
COL6A1-204ENST00000486023 H3BS24 57 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 20.1 ms