RNA–Protein interactions for RNA: ENST00000485901.1

HLA-DOA-204, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

Gene HLA-DOA, Length 596 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-204ENST00000485901 KRTAP4-9Q9BYQ8 210 aa4.43□□□□□ -1.7
HLA-DOA-204ENST00000485901 KRTAP19-5Q3LI72 72 aa4.41□□□□□ -1.7
HLA-DOA-204ENST00000485901 KRTAP19-3Q7Z4W3 81 aa4.41□□□□□ -1.7
HLA-DOA-204ENST00000485901 AHNAK2Q8IVF2 5795 aa4.4□□□□□ -1.71
HLA-DOA-204ENST00000485901 A6NED7 52 aa4.37□□□□□ -1.71
HLA-DOA-204ENST00000485901 LCE3AQ5TA76 89 aa4.37□□□□□ -1.71
HLA-DOA-204ENST00000485901 HMCN1Q96RW7 5635 aa4.36□□□□□ -1.71
HLA-DOA-204ENST00000485901 LCE4AQ5TA78 99 aa4.36□□□□□ -1.71
HLA-DOA-204ENST00000485901 LCE1DQ5T752 114 aa4.34□□□□□ -1.71
HLA-DOA-204ENST00000485901 MT1GP13640 62 aa4.32□□□□□ -1.72
HLA-DOA-204ENST00000485901 KRTAP25-1Q3LHN0 102 aa4.31□□□□□ -1.72
HLA-DOA-204ENST00000485901 PP632Q6XCG6 107 aa4.3□□□□□ -1.72
HLA-DOA-204ENST00000485901 MT1LQ93083 61 aa4.26□□□□□ -1.73
HLA-DOA-204ENST00000485901 SPRR5A0A1B0GTR4 108 aa4.24□□□□□ -1.73
HLA-DOA-204ENST00000485901 KRTAP5-10Q6L8G5 202 aa4.24□□□□□ -1.73
HLA-DOA-204ENST00000485901 KRTAP12-3P60328 96 aa4.23□□□□□ -1.73
HLA-DOA-204ENST00000485901 MT4P47944 62 aa4.21□□□□□ -1.74
HLA-DOA-204ENST00000485901 KRTAP5-4Q6L8H1 288 aa4.21□□□□□ -1.74
HLA-DOA-204ENST00000485901 MT1MQ8N339 61 aa4.2□□□□□ -1.74
HLA-DOA-204ENST00000485901 CDC42SE1Q9NRR8 79 aa4.19□□□□□ -1.74
HLA-DOA-204ENST00000485901 KRTAP23-1A1A580 65 aa4.18□□□□□ -1.74
HLA-DOA-204ENST00000485901 KRTAP5-7Q6L8G8 165 aa4.17□□□□□ -1.74
HLA-DOA-204ENST00000485901 ROMO1P60602 79 aa4.13□□□□□ -1.75
HLA-DOA-204ENST00000485901 LOC100996750A0A140TA64 210 aa4.11□□□□□ -1.75
HLA-DOA-204ENST00000485901 KRTAP4-6Q9BYQ5 205 aa4.11□□□□□ -1.75
HLA-DOA-204ENST00000485901 KRTAP4-3Q9BYR4 195 aa4.08□□□□□ -1.76
HLA-DOA-204ENST00000485901 KRTAP19-4Q3LI73 84 aa4.06□□□□□ -1.76
HLA-DOA-204ENST00000485901 SVIPQ8NHG7 77 aa4.06□□□□□ -1.76
HLA-DOA-204ENST00000485901 KRTAP5-3Q6L8H2 238 aa4.05□□□□□ -1.76
HLA-DOA-204ENST00000485901 KRTAP4-7Q9BYR0 210 aa4.05□□□□□ -1.76
HLA-DOA-204ENST00000485901 KRTAP15-1Q3LI76 137 aa4.02□□□□□ -1.77
HLA-DOA-204ENST00000485901 KRTAP20-2Q3LI61 65 aa3.95□□□□□ -1.78
HLA-DOA-204ENST00000485901 AHNAKQ09666 5890 aaKnown RBP3.92□□□□□ -1.78
HLA-DOA-204ENST00000485901 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
HLA-DOA-204ENST00000485901 BRK1Q8WUW1 75 aa3.9□□□□□ -1.79
HLA-DOA-204ENST00000485901 KRTAP12-4P60329 112 aa3.89□□□□□ -1.79
HLA-DOA-204ENST00000485901 PRO0628Q9UI54 55 aa3.89□□□□□ -1.79
HLA-DOA-204ENST00000485901 KRTAP5-5Q701N2 237 aaPredicted RBP3.88□□□□□ -1.79
HLA-DOA-204ENST00000485901 SYNE1Q8NF91 8797 aaKnown RBP3.76□□□□□ -1.81
HLA-DOA-204ENST00000485901 MUC5ACP98088 5654 aa3.76□□□□□ -1.81
HLA-DOA-204ENST00000485901 MUC5BQ9HC84 5762 aaPredicted RBP3.74□□□□□ -1.81
HLA-DOA-204ENST00000485901 PMAIP1Q13794 54 aa3.7□□□□□ -1.82
HLA-DOA-204ENST00000485901 KRTAP4-11Q9BYQ6 195 aa3.69□□□□□ -1.82
HLA-DOA-204ENST00000485901 KRTAP4-12Q9BQ66 201 aa3.68□□□□□ -1.82
HLA-DOA-204ENST00000485901 KRTAP9-6A8MVA2 160 aa3.65□□□□□ -1.83
HLA-DOA-204ENST00000485901 MT1AP04731 61 aa3.63□□□□□ -1.83
HLA-DOA-204ENST00000485901 KRTAP5-2Q701N4 177 aa3.63□□□□□ -1.83
HLA-DOA-204ENST00000485901 H3BS24 57 aa3.59□□□□□ -1.83
HLA-DOA-204ENST00000485901 KRTAP6-1Q3LI64 71 aa3.59□□□□□ -1.83
HLA-DOA-204ENST00000485901 KTN1-AS1Q86SY8 53 aa3.58□□□□□ -1.84
HLA-DOA-204ENST00000485901 KRTAP5-8O75690 187 aa3.56□□□□□ -1.84
HLA-DOA-204ENST00000485901 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
HLA-DOA-204ENST00000485901 KRTAP9-4Q9BYQ2 154 aa3.56□□□□□ -1.84
HLA-DOA-204ENST00000485901 OBSCNQ5VST9 7968 aa3.49□□□□□ -1.85
HLA-DOA-204ENST00000485901 PRAC1Q96KF2 57 aa3.48□□□□□ -1.85
HLA-DOA-204ENST00000485901 KRTAP6-2Q3LI66 62 aa3.41□□□□□ -1.86
HLA-DOA-204ENST00000485901 MT3P25713 68 aa3.34□□□□□ -1.87
HLA-DOA-204ENST00000485901 KRTAP5-1Q6L8H4 278 aa3.29□□□□□ -1.88
HLA-DOA-204ENST00000485901 KRTAP4-2Q9BYR5 136 aa3.22□□□□□ -1.89
HLA-DOA-204ENST00000485901 LCE1EQ5T753 118 aa3.13□□□□□ -1.91
HLA-DOA-204ENST00000485901 LUZP6Q538Z0 58 aa2.99□□□□□ -1.93
HLA-DOA-204ENST00000485901 LCE1CQ5T751 118 aa2.88□□□□□ -1.95
HLA-DOA-204ENST00000485901 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
HLA-DOA-204ENST00000485901 LCE3DQ9BYE3 92 aa2.86□□□□□ -1.95
HLA-DOA-204ENST00000485901 NDUFAF8A1L188 74 aa2.77□□□□□ -1.97
HLA-DOA-204ENST00000485901 LCE3EQ5T5B0 92 aa2.72□□□□□ -1.97
HLA-DOA-204ENST00000485901 LCE1FQ5T754 118 aa2.69□□□□□ -1.98
HLA-DOA-204ENST00000485901 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
HLA-DOA-204ENST00000485901 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
HLA-DOA-204ENST00000485901 PHGR1C9JFL3 82 aa2.54□□□□□ -2
HLA-DOA-204ENST00000485901 A0A0A0MQY5 61 aa2.46□□□□□ -2.02
HLA-DOA-204ENST00000485901 KRTAP21-2Q3LI59 83 aa2.36□□□□□ -2.03
HLA-DOA-204ENST00000485901 INE1O15225 51 aa2.34□□□□□ -2.03
HLA-DOA-204ENST00000485901 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
HLA-DOA-204ENST00000485901 KRTAP4-4Q9BYR3 166 aa2.14□□□□□ -2.07
HLA-DOA-204ENST00000485901 PRM1P04553 51 aa2.11□□□□□ -2.07
HLA-DOA-204ENST00000485901 KRTAP21-1Q3LI58 79 aa1.92□□□□□ -2.1
HLA-DOA-204ENST00000485901 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 63.8 ms