RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 CCDC179H3BU77 68 aa2.22□□□□□ -2.05
CUX1-208ENST00000485792 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
CUX1-208ENST00000485792 KRTAP19-7Q3SYF9 63 aa2.21□□□□□ -2.06
CUX1-208ENST00000485792 LUZP6Q538Z0 58 aa2.21□□□□□ -2.06
CUX1-208ENST00000485792 A0A1B0GU33 70 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 KRTAP2-3P0C7H8 128 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 SPRR2EP22531 72 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 SPRR2BP35325 72 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 SPRR2AP35326 72 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 KRTAP12-1P59990 96 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 KRTAP20-1Q3LI63 56 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 CAMK2N1Q7Z7J9 78 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 KRTAP2-4Q9BYR9 128 aa2.2□□□□□ -2.06
CUX1-208ENST00000485792 ATP5EP56381 51 aaPredicted RBP2.19□□□□□ -2.06
CUX1-208ENST00000485792 KRTAP5-4Q6L8H1 288 aa2.19□□□□□ -2.06
CUX1-208ENST00000485792 SPATA8Q6RVD6 105 aa2.19□□□□□ -2.06
CUX1-208ENST00000485792 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
CUX1-208ENST00000485792 SERP1Q9Y6X1 66 aa2.19□□□□□ -2.06
CUX1-208ENST00000485792 DSTQ03001 7570 aaKnown RBP2.18□□□□□ -2.06
CUX1-208ENST00000485792 BRK1Q8WUW1 75 aa2.17□□□□□ -2.06
CUX1-208ENST00000485792 LINC01558Q9Y6Z2 57 aa2.16□□□□□ -2.06
CUX1-208ENST00000485792 A0A1B0GU69 56 aa2.15□□□□□ -2.07
CUX1-208ENST00000485792 MT1EP04732 61 aa2.15□□□□□ -2.07
CUX1-208ENST00000485792 A0A0D9SG42 100 aa2.14□□□□□ -2.07
CUX1-208ENST00000485792 TMEM258P61165 79 aa2.14□□□□□ -2.07
CUX1-208ENST00000485792 KRTAP2-1Q9BYU5 128 aa2.13□□□□□ -2.07
CUX1-208ENST00000485792 SPRR2DP22532 72 aa2.12□□□□□ -2.07
CUX1-208ENST00000485792 A6NED7 52 aa2.11□□□□□ -2.07
CUX1-208ENST00000485792 K7ERS5 55 aa2.11□□□□□ -2.07
CUX1-208ENST00000485792 C10orf95Q9H7T3 257 aa2.11□□□□□ -2.07
CUX1-208ENST00000485792 KRTAP19-5Q3LI72 72 aa2.1□□□□□ -2.07
CUX1-208ENST00000485792 SPINT4Q6UDR6 99 aa2.1□□□□□ -2.07
CUX1-208ENST00000485792 KRTAP19-3Q7Z4W3 81 aa2.1□□□□□ -2.07
CUX1-208ENST00000485792 PRR15LQ9BU68 103 aa2.08□□□□□ -2.08
CUX1-208ENST00000485792 MT1GP13640 62 aa2.07□□□□□ -2.08
CUX1-208ENST00000485792 LCE3AQ5TA76 89 aa2.07□□□□□ -2.08
CUX1-208ENST00000485792 KRTAP4-3Q9BYR4 195 aa2.07□□□□□ -2.08
CUX1-208ENST00000485792 UQCR11O14957 56 aa2.06□□□□□ -2.08
CUX1-208ENST00000485792 Q1T7F1 81 aa2.05□□□□□ -2.08
CUX1-208ENST00000485792 MT1LQ93083 61 aa2.05□□□□□ -2.08
CUX1-208ENST00000485792 GPR98Q8WXG9 6306 aa2.05□□□□□ -2.08
CUX1-208ENST00000485792 MT1MQ8N339 61 aa2.04□□□□□ -2.08
CUX1-208ENST00000485792 TNP1P09430 55 aa2.03□□□□□ -2.08
CUX1-208ENST00000485792 OBSCNQ5VST9 7968 aa2.02□□□□□ -2.09
CUX1-208ENST00000485792 HMCN1Q96RW7 5635 aa2□□□□□ -2.09
CUX1-208ENST00000485792 ROMO1P60602 79 aa1.99□□□□□ -2.09
CUX1-208ENST00000485792 MIR22HGQ0VDD5 57 aa1.99□□□□□ -2.09
CUX1-208ENST00000485792 PP632Q6XCG6 107 aa1.99□□□□□ -2.09
CUX1-208ENST00000485792 KRTAP12-3P60328 96 aa1.97□□□□□ -2.09
CUX1-208ENST00000485792 KRTAP25-1Q3LHN0 102 aa1.97□□□□□ -2.09
CUX1-208ENST00000485792 AHNAK2Q8IVF2 5795 aa1.96□□□□□ -2.1
CUX1-208ENST00000485792 KRTAP5-5Q701N2 237 aaPredicted RBP1.93□□□□□ -2.1
CUX1-208ENST00000485792 SYNE1Q8NF91 8797 aaKnown RBP1.93□□□□□ -2.1
CUX1-208ENST00000485792 MT4P47944 62 aa1.88□□□□□ -2.11
CUX1-208ENST00000485792 CDC42SE1Q9NRR8 79 aa1.86□□□□□ -2.11
CUX1-208ENST00000485792 LCE3DQ9BYE3 92 aa1.84□□□□□ -2.11
CUX1-208ENST00000485792 SPRR5A0A1B0GTR4 108 aa1.83□□□□□ -2.12
CUX1-208ENST00000485792 KRTAP5-10Q6L8G5 202 aa1.82□□□□□ -2.12
CUX1-208ENST00000485792 KRTAP20-2Q3LI61 65 aa1.81□□□□□ -2.12
CUX1-208ENST00000485792 KRTAP5-2Q701N4 177 aa1.79□□□□□ -2.12
CUX1-208ENST00000485792 LCE1CQ5T751 118 aa1.77□□□□□ -2.13
CUX1-208ENST00000485792 LCE1BQ5T7P3 118 aa1.77□□□□□ -2.13
CUX1-208ENST00000485792 KRTAP6-1Q3LI64 71 aa1.76□□□□□ -2.13
CUX1-208ENST00000485792 KRTAP12-4P60329 112 aa1.75□□□□□ -2.13
CUX1-208ENST00000485792 MT1AP04731 61 aa1.73□□□□□ -2.13
CUX1-208ENST00000485792 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
CUX1-208ENST00000485792 KRTAP6-2Q3LI66 62 aa1.64□□□□□ -2.15
CUX1-208ENST00000485792 KRTAP5-8O75690 187 aa1.62□□□□□ -2.15
CUX1-208ENST00000485792 INE1O15225 51 aa1.6□□□□□ -2.15
CUX1-208ENST00000485792 MUC5ACP98088 5654 aa1.59□□□□□ -2.15
CUX1-208ENST00000485792 AHNAKQ09666 5890 aaKnown RBP1.59□□□□□ -2.16
CUX1-208ENST00000485792 MUC5BQ9HC84 5762 aaPredicted RBP1.57□□□□□ -2.16
CUX1-208ENST00000485792 MUC19Q7Z5P9 8384 aa1.39□□□□□ -2.19
CUX1-208ENST00000485792 KRTAP21-2Q3LI59 83 aa1.25□□□□□ -2.21
CUX1-208ENST00000485792 PHGR1C9JFL3 82 aa1.07□□□□□ -2.24
CUX1-208ENST00000485792 PRM1P04553 51 aa0.93□□□□□ -2.26
CUX1-208ENST00000485792 KRTAP21-1Q3LI58 79 aa0.76□□□□□ -2.29
CUX1-208ENST00000485792 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 60.1 ms