RNA–Protein interactions for RNA: ENST00000483956.1

SEC61A1-205, Transcript of Sec61 translocon alpha 1 subunit, humanhuman

TSL 1 (best)

Gene SEC61A1, Length 3,046 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A1-205ENST00000483956 KRTAP19-4Q3LI73 84 aa4.01□□□□□ -1.77
SEC61A1-205ENST00000483956 KRTAP4-8A0A0G2JLE6 195 aa4□□□□□ -1.77
SEC61A1-205ENST00000483956 KRTAP4-8Q9BYQ9 185 aa4□□□□□ -1.77
SEC61A1-205ENST00000483956 KRTAP19-7Q3SYF9 63 aa3.99□□□□□ -1.77
SEC61A1-205ENST00000483956 KRTAP4-7Q9BYR0 210 aa3.95□□□□□ -1.78
SEC61A1-205ENST00000483956 KRTAP20-1Q3LI63 56 aa3.94□□□□□ -1.78
SEC61A1-205ENST00000483956 MT1LQ93083 61 aa3.89□□□□□ -1.79
SEC61A1-205ENST00000483956 KRTAP19-6Q3LI70 58 aa3.87□□□□□ -1.79
SEC61A1-205ENST00000483956 MT1EP04732 61 aa3.87□□□□□ -1.79
SEC61A1-205ENST00000483956 FCGBPQ9Y6R7 5405 aaPredicted RBP3.86□□□□□ -1.79
SEC61A1-205ENST00000483956 NEBP20929 6669 aa3.85□□□□□ -1.79
SEC61A1-205ENST00000483956 KRTAP12-4P60329 112 aa3.84□□□□□ -1.79
SEC61A1-205ENST00000483956 SYNE2Q8WXH0 6885 aaKnown RBP3.81□□□□□ -1.8
SEC61A1-205ENST00000483956 MACF1Q9UPN3 7388 aaKnown RBP3.78□□□□□ -1.8
SEC61A1-205ENST00000483956 MUC12Q9UKN1 5478 aa3.77□□□□□ -1.81
SEC61A1-205ENST00000483956 DSTQ03001 7570 aaKnown RBP3.73□□□□□ -1.81
SEC61A1-205ENST00000483956 KRTAP5-9P26371 169 aa3.66□□□□□ -1.82
SEC61A1-205ENST00000483956 OBSCNQ5VST9 7968 aa3.66□□□□□ -1.82
SEC61A1-205ENST00000483956 LOC100996750A0A140TA64 210 aa3.65□□□□□ -1.83
SEC61A1-205ENST00000483956 KRTAP4-3Q9BYR4 195 aa3.6□□□□□ -1.83
SEC61A1-205ENST00000483956 MT1GP13640 62 aa3.6□□□□□ -1.83
SEC61A1-205ENST00000483956 MT1MQ8N339 61 aa3.6□□□□□ -1.83
SEC61A1-205ENST00000483956 KRTAP2-2Q9BYT5 123 aa3.59□□□□□ -1.84
SEC61A1-205ENST00000483956 KRTAP19-3Q7Z4W3 81 aa3.58□□□□□ -1.84
SEC61A1-205ENST00000483956 MDN1Q9NU22 5596 aa3.57□□□□□ -1.84
SEC61A1-205ENST00000483956 SPRR2FQ96RM1 72 aa3.5□□□□□ -1.85
SEC61A1-205ENST00000483956 KRTAP4-9Q9BYQ8 210 aa3.5□□□□□ -1.85
SEC61A1-205ENST00000483956 PRM1P04553 51 aa3.49□□□□□ -1.85
SEC61A1-205ENST00000483956 SYNE1Q8NF91 8797 aaKnown RBP3.46□□□□□ -1.86
SEC61A1-205ENST00000483956 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
SEC61A1-205ENST00000483956 LCE5AQ5TCM9 118 aa3.44□□□□□ -1.86
SEC61A1-205ENST00000483956 LCE3BQ5TA77 95 aa3.43□□□□□ -1.86
SEC61A1-205ENST00000483956 LCE1AQ5T7P2 110 aa3.42□□□□□ -1.86
SEC61A1-205ENST00000483956 KRTAP5-5Q701N2 237 aaPredicted RBP3.41□□□□□ -1.86
SEC61A1-205ENST00000483956 MT1AP04731 61 aa3.38□□□□□ -1.87
SEC61A1-205ENST00000483956 LCE3EQ5T5B0 92 aa3.32□□□□□ -1.88
SEC61A1-205ENST00000483956 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
SEC61A1-205ENST00000483956 SPRR2EP22531 72 aa3.31□□□□□ -1.88
SEC61A1-205ENST00000483956 SPRR2BP35325 72 aa3.31□□□□□ -1.88
SEC61A1-205ENST00000483956 SPRR2AP35326 72 aa3.31□□□□□ -1.88
SEC61A1-205ENST00000483956 KRTAP6-1Q3LI64 71 aa3.28□□□□□ -1.88
SEC61A1-205ENST00000483956 SPRR2DP22532 72 aa3.24□□□□□ -1.89
SEC61A1-205ENST00000483956 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
SEC61A1-205ENST00000483956 KRTAP6-2Q3LI66 62 aa3.19□□□□□ -1.9
SEC61A1-205ENST00000483956 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
SEC61A1-205ENST00000483956 KRTAP5-10Q6L8G5 202 aa3.13□□□□□ -1.91
SEC61A1-205ENST00000483956 LCE1DQ5T752 114 aa3.08□□□□□ -1.92
SEC61A1-205ENST00000483956 KRTAP9-4Q9BYQ2 154 aa3.06□□□□□ -1.92
SEC61A1-205ENST00000483956 AHNAK2Q8IVF2 5795 aa3.04□□□□□ -1.92
SEC61A1-205ENST00000483956 LCE4AQ5TA78 99 aa3.03□□□□□ -1.92
SEC61A1-205ENST00000483956 HMCN1Q96RW7 5635 aa2.93□□□□□ -1.94
SEC61A1-205ENST00000483956 MT3P25713 68 aa2.92□□□□□ -1.94
SEC61A1-205ENST00000483956 MT4P47944 62 aa2.9□□□□□ -1.95
SEC61A1-205ENST00000483956 AHNAKQ09666 5890 aaKnown RBP2.89□□□□□ -1.95
SEC61A1-205ENST00000483956 KRTAP5-3Q6L8H2 238 aa2.87□□□□□ -1.95
SEC61A1-205ENST00000483956 MUC5BQ9HC84 5762 aaPredicted RBP2.85□□□□□ -1.95
SEC61A1-205ENST00000483956 KRTAP5-4Q6L8H1 288 aa2.85□□□□□ -1.95
SEC61A1-205ENST00000483956 KRTAP4-6Q9BYQ5 205 aa2.78□□□□□ -1.96
SEC61A1-205ENST00000483956 LCE1FQ5T754 118 aa2.68□□□□□ -1.98
SEC61A1-205ENST00000483956 MUC5ACP98088 5654 aa2.62□□□□□ -1.99
SEC61A1-205ENST00000483956 KRTAP20-2Q3LI61 65 aa2.61□□□□□ -1.99
SEC61A1-205ENST00000483956 KRTAP4-11Q9BYQ6 195 aa2.61□□□□□ -1.99
SEC61A1-205ENST00000483956 KRTAP5-2Q701N4 177 aa2.59□□□□□ -2
SEC61A1-205ENST00000483956 KRTAP5-8O75690 187 aa2.45□□□□□ -2.02
SEC61A1-205ENST00000483956 KRTAP9-9Q9BYP9 154 aa2.44□□□□□ -2.02
SEC61A1-205ENST00000483956 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
SEC61A1-205ENST00000483956 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
SEC61A1-205ENST00000483956 LCE1BQ5T7P3 118 aa2.33□□□□□ -2.04
SEC61A1-205ENST00000483956 LCE1CQ5T751 118 aa2.24□□□□□ -2.05
SEC61A1-205ENST00000483956 KRTAP4-2Q9BYR5 136 aa2.23□□□□□ -2.05
SEC61A1-205ENST00000483956 KRTAP21-1Q3LI58 79 aa2.2□□□□□ -2.06
SEC61A1-205ENST00000483956 KRTAP4-12Q9BQ66 201 aa2.19□□□□□ -2.06
SEC61A1-205ENST00000483956 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.15□□□□□ -2.06
SEC61A1-205ENST00000483956 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
SEC61A1-205ENST00000483956 KRTAP4-4Q9BYR3 166 aa1.95□□□□□ -2.1
SEC61A1-205ENST00000483956 KRTAP5-11Q6L8G4 156 aa1.92□□□□□ -2.1
SEC61A1-205ENST00000483956 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
SEC61A1-205ENST00000483956 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 14.2 ms