RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 KRTAP2-1Q9BYU5 128 aa4.7□□□□□ -1.66
USP40-214ENST00000483519 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.67□□□□□ -1.66
USP40-214ENST00000483519 KRTAP4-8A0A0G2JLE6 195 aa4.63□□□□□ -1.67
USP40-214ENST00000483519 KRTAP4-8Q9BYQ9 185 aa4.63□□□□□ -1.67
USP40-214ENST00000483519 KRTAP19-7Q3SYF9 63 aa4.59□□□□□ -1.68
USP40-214ENST00000483519 KRTAP4-7Q9BYR0 210 aa4.55□□□□□ -1.68
USP40-214ENST00000483519 KRTAP9-7A8MTY7 169 aa4.54□□□□□ -1.68
USP40-214ENST00000483519 KMT2DO14686 5537 aa4.53□□□□□ -1.68
USP40-214ENST00000483519 KRTAP6-3Q3LI67 103 aa4.51□□□□□ -1.69
USP40-214ENST00000483519 LCE1FQ5T754 118 aa4.5□□□□□ -1.69
USP40-214ENST00000483519 MT1LQ93083 61 aa4.49□□□□□ -1.69
USP40-214ENST00000483519 MACF1Q9UPN3 7388 aaKnown RBP4.48□□□□□ -1.69
USP40-214ENST00000483519 MT1EP04732 61 aa4.45□□□□□ -1.7
USP40-214ENST00000483519 KRTAP9-4Q9BYQ2 154 aa4.44□□□□□ -1.7
USP40-214ENST00000483519 KRTAP5-9P26371 169 aa4.39□□□□□ -1.71
USP40-214ENST00000483519 LCE1AQ5T7P2 110 aa4.37□□□□□ -1.71
USP40-214ENST00000483519 SYNE2Q8WXH0 6885 aaKnown RBP4.36□□□□□ -1.71
USP40-214ENST00000483519 LCE1EQ5T753 118 aa4.35□□□□□ -1.71
USP40-214ENST00000483519 SPRR2FQ96RM1 72 aa4.33□□□□□ -1.72
USP40-214ENST00000483519 LOC100996750A0A140TA64 210 aa4.23□□□□□ -1.73
USP40-214ENST00000483519 KRTAP12-4P60329 112 aa4.22□□□□□ -1.73
USP40-214ENST00000483519 SPRR2EP22531 72 aa4.21□□□□□ -1.74
USP40-214ENST00000483519 SPRR2BP35325 72 aa4.21□□□□□ -1.74
USP40-214ENST00000483519 SPRR2AP35326 72 aa4.21□□□□□ -1.74
USP40-214ENST00000483519 MT1GP13640 62 aa4.21□□□□□ -1.74
USP40-214ENST00000483519 KRTAP9-9Q9BYP9 154 aa4.21□□□□□ -1.74
USP40-214ENST00000483519 KRTAP4-3Q9BYR4 195 aa4.18□□□□□ -1.74
USP40-214ENST00000483519 NEBP20929 6669 aa4.16□□□□□ -1.74
USP40-214ENST00000483519 LCE1DQ5T752 114 aa4.15□□□□□ -1.75
USP40-214ENST00000483519 MT1MQ8N339 61 aa4.14□□□□□ -1.75
USP40-214ENST00000483519 KRTAP19-3Q7Z4W3 81 aa4.13□□□□□ -1.75
USP40-214ENST00000483519 MUC12Q9UKN1 5478 aa4.12□□□□□ -1.75
USP40-214ENST00000483519 KRTAP4-6Q9BYQ5 205 aa4.08□□□□□ -1.76
USP40-214ENST00000483519 SPRR2DP22532 72 aa4.08□□□□□ -1.76
USP40-214ENST00000483519 MDN1Q9NU22 5596 aa4.07□□□□□ -1.76
USP40-214ENST00000483519 KRTAP20-1Q3LI63 56 aa4.03□□□□□ -1.76
USP40-214ENST00000483519 LCE4AQ5TA78 99 aa4□□□□□ -1.77
USP40-214ENST00000483519 LCE3BQ5TA77 95 aa3.97□□□□□ -1.77
USP40-214ENST00000483519 MT1AP04731 61 aa3.94□□□□□ -1.78
USP40-214ENST00000483519 LCE3EQ5T5B0 92 aa3.92□□□□□ -1.78
USP40-214ENST00000483519 KRTAP4-9Q9BYQ8 210 aa3.89□□□□□ -1.79
USP40-214ENST00000483519 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
USP40-214ENST00000483519 MT3P25713 68 aa3.82□□□□□ -1.8
USP40-214ENST00000483519 KRTAP6-1Q3LI64 71 aa3.8□□□□□ -1.8
USP40-214ENST00000483519 PRM1P04553 51 aa3.76□□□□□ -1.81
USP40-214ENST00000483519 KRTAP5-5Q701N2 237 aaPredicted RBP3.75□□□□□ -1.81
USP40-214ENST00000483519 DSTQ03001 7570 aaKnown RBP3.74□□□□□ -1.81
USP40-214ENST00000483519 SYNE1Q8NF91 8797 aaKnown RBP3.71□□□□□ -1.82
USP40-214ENST00000483519 KRTAP5-4Q6L8H1 288 aa3.59□□□□□ -1.83
USP40-214ENST00000483519 KRTAP6-2Q3LI66 62 aa3.57□□□□□ -1.84
USP40-214ENST00000483519 MT4P47944 62 aa3.5□□□□□ -1.85
USP40-214ENST00000483519 OBSCNQ5VST9 7968 aa3.43□□□□□ -1.86
USP40-214ENST00000483519 KRTAP20-2Q3LI61 65 aa3.36□□□□□ -1.87
USP40-214ENST00000483519 HMCN1Q96RW7 5635 aa3.35□□□□□ -1.87
USP40-214ENST00000483519 KRTAP4-12Q9BQ66 201 aa3.33□□□□□ -1.88
USP40-214ENST00000483519 KRTAP5-3Q6L8H2 238 aa3.25□□□□□ -1.89
USP40-214ENST00000483519 KRTAP5-2Q701N4 177 aa3.2□□□□□ -1.9
USP40-214ENST00000483519 AHNAK2Q8IVF2 5795 aa3.16□□□□□ -1.9
USP40-214ENST00000483519 KRTAP4-2Q9BYR5 136 aa3.16□□□□□ -1.9
USP40-214ENST00000483519 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
USP40-214ENST00000483519 KRTAP5-10Q6L8G5 202 aa3.11□□□□□ -1.91
USP40-214ENST00000483519 KRTAP4-11Q9BYQ6 195 aa3.01□□□□□ -1.93
USP40-214ENST00000483519 KRTAP5-7Q6L8G8 165 aa2.98□□□□□ -1.93
USP40-214ENST00000483519 MUC19Q7Z5P9 8384 aa2.98□□□□□ -1.93
USP40-214ENST00000483519 KRTAP5-8O75690 187 aa2.88□□□□□ -1.95
USP40-214ENST00000483519 LCE1CQ5T751 118 aa2.81□□□□□ -1.96
USP40-214ENST00000483519 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
USP40-214ENST00000483519 MUC5ACP98088 5654 aa2.81□□□□□ -1.96
USP40-214ENST00000483519 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
USP40-214ENST00000483519 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.63□□□□□ -1.99
USP40-214ENST00000483519 AHNAKQ09666 5890 aaKnown RBP2.55□□□□□ -2
USP40-214ENST00000483519 MUC5BQ9HC84 5762 aaPredicted RBP2.54□□□□□ -2
USP40-214ENST00000483519 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
USP40-214ENST00000483519 KRTAP21-1Q3LI58 79 aa2.4□□□□□ -2.03
USP40-214ENST00000483519 KRTAP5-11Q6L8G4 156 aa2.38□□□□□ -2.03
USP40-214ENST00000483519 KRTAP4-4Q9BYR3 166 aa2.21□□□□□ -2.06
USP40-214ENST00000483519 PHGR1C9JFL3 82 aa2□□□□□ -2.09
USP40-214ENST00000483519 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 68.2 ms