RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 PRO2289Q9P1D8 64 aa3.36□□□□□ -1.87
USP4-210ENST00000483212 PRO0628Q9UI54 55 aa3.36□□□□□ -1.87
USP4-210ENST00000483212 MACF1Q9UPN3 7388 aaKnown RBP3.34□□□□□ -1.87
USP4-210ENST00000483212 ROMO1P60602 79 aa3.29□□□□□ -1.88
USP4-210ENST00000483212 KRTAP10-12P60413 245 aa3.28□□□□□ -1.88
USP4-210ENST00000483212 PMAIP1Q13794 54 aa3.27□□□□□ -1.89
USP4-210ENST00000483212 SYNE2Q8WXH0 6885 aaKnown RBP3.25□□□□□ -1.89
USP4-210ENST00000483212 KMT2DO14686 5537 aa3.24□□□□□ -1.89
USP4-210ENST00000483212 TNP1P09430 55 aa3.24□□□□□ -1.89
USP4-210ENST00000483212 KRTAP25-1Q3LHN0 102 aa3.24□□□□□ -1.89
USP4-210ENST00000483212 KRTAP5-2Q701N4 177 aa3.24□□□□□ -1.89
USP4-210ENST00000483212 LCE1EQ5T753 118 aa3.23□□□□□ -1.89
USP4-210ENST00000483212 LCE1AQ5T7P2 110 aa3.19□□□□□ -1.9
USP4-210ENST00000483212 LCE3AQ5TA76 89 aa3.17□□□□□ -1.9
USP4-210ENST00000483212 KTN1-AS1Q86SY8 53 aa3.12□□□□□ -1.91
USP4-210ENST00000483212 KRTAP8-1Q8IUC2 63 aa3.11□□□□□ -1.91
USP4-210ENST00000483212 PRAC1Q96KF2 57 aa3.11□□□□□ -1.91
USP4-210ENST00000483212 KRTAP19-7Q3SYF9 63 aa3.1□□□□□ -1.91
USP4-210ENST00000483212 PP632Q6XCG6 107 aa3.09□□□□□ -1.91
USP4-210ENST00000483212 KRTAP19-5Q3LI72 72 aa3.08□□□□□ -1.92
USP4-210ENST00000483212 MUC12Q9UKN1 5478 aa3.06□□□□□ -1.92
USP4-210ENST00000483212 KRTAP6-3Q3LI67 103 aa3.05□□□□□ -1.92
USP4-210ENST00000483212 MT1EP04732 61 aa3.04□□□□□ -1.92
USP4-210ENST00000483212 KRTAP12-3P60328 96 aa3.03□□□□□ -1.92
USP4-210ENST00000483212 NEBP20929 6669 aa3.02□□□□□ -1.93
USP4-210ENST00000483212 KRTAP4-3Q9BYR4 195 aa3.02□□□□□ -1.93
USP4-210ENST00000483212 MDN1Q9NU22 5596 aa3.01□□□□□ -1.93
USP4-210ENST00000483212 SPRR2FQ96RM1 72 aa3.01□□□□□ -1.93
USP4-210ENST00000483212 KRTAP2-2Q9BYT5 123 aa3□□□□□ -1.93
USP4-210ENST00000483212 OBSCNQ5VST9 7968 aa2.99□□□□□ -1.93
USP4-210ENST00000483212 MT1LQ93083 61 aa2.95□□□□□ -1.94
USP4-210ENST00000483212 KRTAP19-3Q7Z4W3 81 aa2.93□□□□□ -1.94
USP4-210ENST00000483212 SPRR2EP22531 72 aa2.89□□□□□ -1.95
USP4-210ENST00000483212 SPRR2BP35325 72 aa2.89□□□□□ -1.95
USP4-210ENST00000483212 SPRR2AP35326 72 aa2.89□□□□□ -1.95
USP4-210ENST00000483212 MT1GP13640 62 aa2.88□□□□□ -1.95
USP4-210ENST00000483212 MT1MQ8N339 61 aa2.86□□□□□ -1.95
USP4-210ENST00000483212 LCE3CQ5T5A8 94 aa2.83□□□□□ -1.96
USP4-210ENST00000483212 NDUFAF8A1L188 74 aa2.82□□□□□ -1.96
USP4-210ENST00000483212 DSTQ03001 7570 aaKnown RBP2.81□□□□□ -1.96
USP4-210ENST00000483212 KRTAP5-8O75690 187 aa2.8□□□□□ -1.96
USP4-210ENST00000483212 SPRR2DP22532 72 aa2.79□□□□□ -1.96
USP4-210ENST00000483212 SPRR5A0A1B0GTR4 108 aa2.75□□□□□ -1.97
USP4-210ENST00000483212 KRTAP9-6A8MVA2 160 aa2.71□□□□□ -1.98
USP4-210ENST00000483212 MT3P25713 68 aa2.68□□□□□ -1.98
USP4-210ENST00000483212 KRTAP2-3P0C7H8 128 aa2.67□□□□□ -1.98
USP4-210ENST00000483212 KRTAP2-4Q9BYR9 128 aa2.67□□□□□ -1.98
USP4-210ENST00000483212 KRTAP20-1Q3LI63 56 aa2.65□□□□□ -1.99
USP4-210ENST00000483212 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
USP4-210ENST00000483212 KRTAP2-1Q9BYU5 128 aa2.61□□□□□ -1.99
USP4-210ENST00000483212 SYNE1Q8NF91 8797 aaKnown RBP2.56□□□□□ -2
USP4-210ENST00000483212 MT1AP04731 61 aa2.51□□□□□ -2.01
USP4-210ENST00000483212 KRTAP6-1Q3LI64 71 aa2.49□□□□□ -2.01
USP4-210ENST00000483212 LUZP6Q538Z0 58 aa2.48□□□□□ -2.01
USP4-210ENST00000483212 HMCN1Q96RW7 5635 aa2.48□□□□□ -2.01
USP4-210ENST00000483212 LCE1FQ5T754 118 aa2.43□□□□□ -2.02
USP4-210ENST00000483212 MT4P47944 62 aa2.41□□□□□ -2.02
USP4-210ENST00000483212 KRTAP12-4P60329 112 aa2.39□□□□□ -2.03
USP4-210ENST00000483212 KRTAP20-2Q3LI61 65 aa2.37□□□□□ -2.03
USP4-210ENST00000483212 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
USP4-210ENST00000483212 AHNAK2Q8IVF2 5795 aa2.27□□□□□ -2.05
USP4-210ENST00000483212 GPR98Q8WXG9 6306 aa2.19□□□□□ -2.06
USP4-210ENST00000483212 LCE3EQ5T5B0 92 aa2.12□□□□□ -2.07
USP4-210ENST00000483212 KRTAP5-10Q6L8G5 202 aa2.09□□□□□ -2.07
USP4-210ENST00000483212 LCE3DQ9BYE3 92 aa2.09□□□□□ -2.07
USP4-210ENST00000483212 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
USP4-210ENST00000483212 LCE1BQ5T7P3 118 aa2.01□□□□□ -2.09
USP4-210ENST00000483212 MUC5ACP98088 5654 aa2□□□□□ -2.09
USP4-210ENST00000483212 INE1O15225 51 aa1.96□□□□□ -2.1
USP4-210ENST00000483212 KRTAP5-7Q6L8G8 165 aa1.95□□□□□ -2.1
USP4-210ENST00000483212 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
USP4-210ENST00000483212 AHNAKQ09666 5890 aaKnown RBP1.81□□□□□ -2.12
USP4-210ENST00000483212 MUC19Q7Z5P9 8384 aa1.76□□□□□ -2.13
USP4-210ENST00000483212 PRM1P04553 51 aa1.71□□□□□ -2.14
USP4-210ENST00000483212 KRTAP21-2Q3LI59 83 aa1.65□□□□□ -2.15
USP4-210ENST00000483212 PHGR1C9JFL3 82 aa1.43□□□□□ -2.18
USP4-210ENST00000483212 KRTAP21-1Q3LI58 79 aa1.06□□□□□ -2.24
USP4-210ENST00000483212 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 28.7 ms