RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 KRTAP4-3Q9BYR4 195 aa3.69□□□□□ -1.82
CPSF4-212ENST00000482251 LCE1DQ5T752 114 aa3.68□□□□□ -1.82
CPSF4-212ENST00000482251 MT4P47944 62 aa3.66□□□□□ -1.82
CPSF4-212ENST00000482251 V9GYY9 64 aa3.65□□□□□ -1.83
CPSF4-212ENST00000482251 SVIPQ8NHG7 77 aa3.64□□□□□ -1.83
CPSF4-212ENST00000482251 LINC01558Q9Y6Z2 57 aa3.64□□□□□ -1.83
CPSF4-212ENST00000482251 H3BS24 57 aa3.63□□□□□ -1.83
CPSF4-212ENST00000482251 HMCN1Q96RW7 5635 aa3.62□□□□□ -1.83
CPSF4-212ENST00000482251 LCE4AQ5TA78 99 aa3.62□□□□□ -1.83
CPSF4-212ENST00000482251 RPS28P62857 69 aaKnown RBP3.59□□□□□ -1.83
CPSF4-212ENST00000482251 KRTAP4-7Q9BYR0 210 aa3.59□□□□□ -1.83
CPSF4-212ENST00000482251 UQCR11O14957 56 aa3.57□□□□□ -1.84
CPSF4-212ENST00000482251 KRTAP12-3P60328 96 aa3.57□□□□□ -1.84
CPSF4-212ENST00000482251 AHNAK2Q8IVF2 5795 aa3.55□□□□□ -1.84
CPSF4-212ENST00000482251 KRTAP5-4Q6L8H1 288 aa3.54□□□□□ -1.84
CPSF4-212ENST00000482251 KRTAP4-6Q9BYQ5 205 aa3.53□□□□□ -1.84
CPSF4-212ENST00000482251 K7ERS5 55 aa3.51□□□□□ -1.85
CPSF4-212ENST00000482251 KRTAP5-10Q6L8G5 202 aa3.51□□□□□ -1.85
CPSF4-212ENST00000482251 MIR22HGQ0VDD5 57 aa3.5□□□□□ -1.85
CPSF4-212ENST00000482251 Q1T7F1 81 aa3.5□□□□□ -1.85
CPSF4-212ENST00000482251 KRTAP25-1Q3LHN0 102 aa3.45□□□□□ -1.86
CPSF4-212ENST00000482251 PSPHP1O15172 72 aa3.44□□□□□ -1.86
CPSF4-212ENST00000482251 LOC100996750A0A140TA64 210 aa3.41□□□□□ -1.86
CPSF4-212ENST00000482251 KRTAP5-7Q6L8G8 165 aa3.4□□□□□ -1.87
CPSF4-212ENST00000482251 KRTAP5-5Q701N2 237 aaPredicted RBP3.4□□□□□ -1.87
CPSF4-212ENST00000482251 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
CPSF4-212ENST00000482251 A6NED7 52 aa3.38□□□□□ -1.87
CPSF4-212ENST00000482251 KRTAP20-2Q3LI61 65 aa3.38□□□□□ -1.87
CPSF4-212ENST00000482251 SYNE1Q8NF91 8797 aaKnown RBP3.34□□□□□ -1.87
CPSF4-212ENST00000482251 SPRR5A0A1B0GTR4 108 aa3.31□□□□□ -1.88
CPSF4-212ENST00000482251 KRTAP12-4P60329 112 aa3.31□□□□□ -1.88
CPSF4-212ENST00000482251 KRTAP15-1Q3LI76 137 aa3.31□□□□□ -1.88
CPSF4-212ENST00000482251 LCE3CQ5T5A8 94 aa3.27□□□□□ -1.89
CPSF4-212ENST00000482251 CDC42SE1Q9NRR8 79 aa3.27□□□□□ -1.89
CPSF4-212ENST00000482251 KRTAP23-1A1A580 65 aa3.26□□□□□ -1.89
CPSF4-212ENST00000482251 KRTAP19-4Q3LI73 84 aa3.24□□□□□ -1.89
CPSF4-212ENST00000482251 ROMO1P60602 79 aa3.19□□□□□ -1.9
CPSF4-212ENST00000482251 KRTAP6-1Q3LI64 71 aa3.17□□□□□ -1.9
CPSF4-212ENST00000482251 MT1AP04731 61 aa3.16□□□□□ -1.9
CPSF4-212ENST00000482251 BRK1Q8WUW1 75 aa3.16□□□□□ -1.9
CPSF4-212ENST00000482251 KRTAP9-6A8MVA2 160 aa3.12□□□□□ -1.91
CPSF4-212ENST00000482251 KRTAP5-2Q701N4 177 aa3.1□□□□□ -1.91
CPSF4-212ENST00000482251 KRTAP4-11Q9BYQ6 195 aa3.09□□□□□ -1.91
CPSF4-212ENST00000482251 PRO0628Q9UI54 55 aa3.05□□□□□ -1.92
CPSF4-212ENST00000482251 KRTAP6-2Q3LI66 62 aa3.04□□□□□ -1.92
CPSF4-212ENST00000482251 KRTAP9-4Q9BYQ2 154 aa3.04□□□□□ -1.92
CPSF4-212ENST00000482251 OBSCNQ5VST9 7968 aa2.99□□□□□ -1.93
CPSF4-212ENST00000482251 KRTAP5-8O75690 187 aa2.99□□□□□ -1.93
CPSF4-212ENST00000482251 PMAIP1Q13794 54 aa2.98□□□□□ -1.93
CPSF4-212ENST00000482251 MUC5BQ9HC84 5762 aaPredicted RBP2.97□□□□□ -1.93
CPSF4-212ENST00000482251 MUC5ACP98088 5654 aa2.97□□□□□ -1.93
CPSF4-212ENST00000482251 A0A0A0MQY5 61 aa2.96□□□□□ -1.94
CPSF4-212ENST00000482251 AHNAKQ09666 5890 aaKnown RBP2.96□□□□□ -1.94
CPSF4-212ENST00000482251 KRTAP9-9Q9BYP9 154 aa2.88□□□□□ -1.95
CPSF4-212ENST00000482251 MT3P25713 68 aa2.87□□□□□ -1.95
CPSF4-212ENST00000482251 KTN1-AS1Q86SY8 53 aa2.85□□□□□ -1.95
CPSF4-212ENST00000482251 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
CPSF4-212ENST00000482251 PRAC1Q96KF2 57 aa2.79□□□□□ -1.96
CPSF4-212ENST00000482251 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
CPSF4-212ENST00000482251 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
CPSF4-212ENST00000482251 KRTAP4-2Q9BYR5 136 aa2.53□□□□□ -2
CPSF4-212ENST00000482251 KRTAP4-12Q9BQ66 201 aa2.52□□□□□ -2.01
CPSF4-212ENST00000482251 LCE1CQ5T751 118 aa2.45□□□□□ -2.02
CPSF4-212ENST00000482251 LUZP6Q538Z0 58 aa2.44□□□□□ -2.02
CPSF4-212ENST00000482251 LCE3DQ9BYE3 92 aa2.34□□□□□ -2.03
CPSF4-212ENST00000482251 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
CPSF4-212ENST00000482251 NDUFAF8A1L188 74 aa2.21□□□□□ -2.06
CPSF4-212ENST00000482251 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.21□□□□□ -2.06
CPSF4-212ENST00000482251 LCE3EQ5T5B0 92 aa2.19□□□□□ -2.06
CPSF4-212ENST00000482251 LCE1FQ5T754 118 aa2.19□□□□□ -2.06
CPSF4-212ENST00000482251 KRTAP21-2Q3LI59 83 aa2.07□□□□□ -2.08
CPSF4-212ENST00000482251 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
CPSF4-212ENST00000482251 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
CPSF4-212ENST00000482251 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
CPSF4-212ENST00000482251 INE1O15225 51 aa1.82□□□□□ -2.12
CPSF4-212ENST00000482251 PRM1P04553 51 aa1.66□□□□□ -2.14
CPSF4-212ENST00000482251 KRTAP21-1Q3LI58 79 aa1.57□□□□□ -2.16
CPSF4-212ENST00000482251 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 59.3 ms