RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 DYNC1H1Q14204 4646 aaKnown RBP1.03□□□□□ -2.25
VPS41-212ENST00000482217 A0A096LNI7 61 aa1.02□□□□□ -2.25
VPS41-212ENST00000482217 KRTAP19-3Q7Z4W3 81 aa1.02□□□□□ -2.25
VPS41-212ENST00000482217 LRP1BQ9NZR2 4599 aa1.02□□□□□ -2.25
VPS41-212ENST00000482217 APOBP04114 4563 aaKnown RBP1.01□□□□□ -2.25
VPS41-212ENST00000482217 RYR1P21817 5038 aa1.01□□□□□ -2.25
VPS41-212ENST00000482217 TGP01266 2768 aa1.01□□□□□ -2.25
VPS41-212ENST00000482217 PKHD1P08F94 4074 aa1□□□□□ -2.25
VPS41-212ENST00000482217 FLGP20930 4061 aaPredicted RBP1□□□□□ -2.25
VPS41-212ENST00000482217 BIRC6Q9NR09 4857 aa0.99□□□□□ -2.25
VPS41-212ENST00000482217 KIAA1109Q2LD37 5005 aa0.99□□□□□ -2.25
VPS41-212ENST00000482217 FAT1Q14517 4588 aa0.98□□□□□ -2.25
VPS41-212ENST00000482217 ABCA13Q86UQ4 5058 aa0.97□□□□□ -2.25
VPS41-212ENST00000482217 FAT3Q8TDW7 4589 aa0.97□□□□□ -2.25
VPS41-212ENST00000482217 HERC2O95714 4834 aa0.97□□□□□ -2.25
VPS41-212ENST00000482217 TNP1P09430 55 aa0.97□□□□□ -2.25
VPS41-212ENST00000482217 LRP1Q07954 4544 aaKnown RBP0.96□□□□□ -2.26
VPS41-212ENST00000482217 SMR3BP02814 79 aaPredicted RBP0.96□□□□□ -2.26
VPS41-212ENST00000482217 PCLOQ9Y6V0 5065 aa0.95□□□□□ -2.26
VPS41-212ENST00000482217 C9orf92A6NGG3 77 aa0.92□□□□□ -2.26
VPS41-212ENST00000482217 MT1HL1P0DM35 61 aa0.91□□□□□ -2.26
VPS41-212ENST00000482217 RPS29P62273 56 aaKnown RBP0.91□□□□□ -2.26
VPS41-212ENST00000482217 HMCN2Q8NDA2 5059 aa0.91□□□□□ -2.26
VPS41-212ENST00000482217 HERC1Q15751 4861 aa0.9□□□□□ -2.27
VPS41-212ENST00000482217 LPAP08519 4548 aa0.89□□□□□ -2.27
VPS41-212ENST00000482217 UBR4Q5T4S7 5183 aa0.88□□□□□ -2.27
VPS41-212ENST00000482217 MUC17Q685J3 4493 aa0.87□□□□□ -2.27
VPS41-212ENST00000482217 SYNE1Q8NF91 8797 aaKnown RBP0.87□□□□□ -2.27
VPS41-212ENST00000482217 LRP2P98164 4655 aa0.86□□□□□ -2.27
VPS41-212ENST00000482217 RNF213Q63HN8 5207 aa0.85□□□□□ -2.27
VPS41-212ENST00000482217 MUC2Q02817 5179 aa0.85□□□□□ -2.27
VPS41-212ENST00000482217 FAT4Q6V0I7 4981 aa0.83□□□□□ -2.28
VPS41-212ENST00000482217 KRTAP8-1Q8IUC2 63 aa0.82□□□□□ -2.28
VPS41-212ENST00000482217 KRTAP21-1Q3LI58 79 aa0.8□□□□□ -2.28
VPS41-212ENST00000482217 KRTAP19-2Q3LHN2 52 aa0.79□□□□□ -2.28
VPS41-212ENST00000482217 SPRR2DP22532 72 aa0.78□□□□□ -2.28
VPS41-212ENST00000482217 MT1HP80294 61 aa0.77□□□□□ -2.29
VPS41-212ENST00000482217 KRTAP6-2Q3LI66 62 aa0.76□□□□□ -2.29
VPS41-212ENST00000482217 FSIP2Q5CZC0 6907 aa0.76□□□□□ -2.29
VPS41-212ENST00000482217 MT2AP02795 61 aa0.74□□□□□ -2.29
VPS41-212ENST00000482217 MT1FP04733 61 aa0.74□□□□□ -2.29
VPS41-212ENST00000482217 USH2AO75445 5202 aa0.73□□□□□ -2.29
VPS41-212ENST00000482217 SPRR2BP35325 72 aa0.72□□□□□ -2.29
VPS41-212ENST00000482217 KRTAP19-5Q3LI72 72 aa0.72□□□□□ -2.29
VPS41-212ENST00000482217 KRTAP5-10Q6L8G5 202 aa0.72□□□□□ -2.29
VPS41-212ENST00000482217 SYNE2Q8WXH0 6885 aaKnown RBP0.71□□□□□ -2.3
VPS41-212ENST00000482217 SPRR2GQ9BYE4 73 aa0.71□□□□□ -2.3
VPS41-212ENST00000482217 SSPOA2VEC9 5147 aa0.71□□□□□ -2.3
VPS41-212ENST00000482217 MACF1Q9UPN3 7388 aaKnown RBP0.7□□□□□ -2.3
VPS41-212ENST00000482217 MUC16Q8WXI7 14507 aa0.7□□□□□ -2.3
VPS41-212ENST00000482217 MT1AP04731 61 aa0.69□□□□□ -2.3
VPS41-212ENST00000482217 MT1BP07438 61 aa0.69□□□□□ -2.3
VPS41-212ENST00000482217 KRTAP19-8Q3LI54 63 aa0.69□□□□□ -2.3
VPS41-212ENST00000482217 AHNAK2Q8IVF2 5795 aa0.68□□□□□ -2.3
VPS41-212ENST00000482217 KMT2DO14686 5537 aa0.66□□□□□ -2.3
VPS41-212ENST00000482217 MT1XP80297 61 aa0.66□□□□□ -2.3
VPS41-212ENST00000482217 KRTAP19-6Q3LI70 58 aa0.65□□□□□ -2.31
VPS41-212ENST00000482217 SPRR2AP35326 72 aa0.64□□□□□ -2.31
VPS41-212ENST00000482217 NEBP20929 6669 aa0.63□□□□□ -2.31
VPS41-212ENST00000482217 MUC12Q9UKN1 5478 aa0.62□□□□□ -2.31
VPS41-212ENST00000482217 SPRR2FQ96RM1 72 aa0.61□□□□□ -2.31
VPS41-212ENST00000482217 MDN1Q9NU22 5596 aa0.6□□□□□ -2.31
VPS41-212ENST00000482217 SPRR2EP22531 72 aa0.59□□□□□ -2.31
VPS41-212ENST00000482217 KRTAP19-7Q3SYF9 63 aa0.59□□□□□ -2.31
VPS41-212ENST00000482217 DSTQ03001 7570 aaKnown RBP0.58□□□□□ -2.32
VPS41-212ENST00000482217 MT1EP04732 61 aa0.58□□□□□ -2.32
VPS41-212ENST00000482217 MT1LQ93083 61 aa0.57□□□□□ -2.32
VPS41-212ENST00000482217 MT1GP13640 62 aa0.55□□□□□ -2.32
VPS41-212ENST00000482217 MT1MQ8N339 61 aa0.55□□□□□ -2.32
VPS41-212ENST00000482217 KRTAP20-1Q3LI63 56 aa0.5□□□□□ -2.33
VPS41-212ENST00000482217 MUC5BQ9HC84 5762 aaPredicted RBP0.5□□□□□ -2.33
VPS41-212ENST00000482217 KRTAP6-1Q3LI64 71 aa0.48□□□□□ -2.33
VPS41-212ENST00000482217 MT4P47944 62 aa0.47□□□□□ -2.33
VPS41-212ENST00000482217 GPR98Q8WXG9 6306 aa0.45□□□□□ -2.34
VPS41-212ENST00000482217 KRTAP20-2Q3LI61 65 aa0.45□□□□□ -2.34
VPS41-212ENST00000482217 MUC5ACP98088 5654 aa0.45□□□□□ -2.34
VPS41-212ENST00000482217 AHNAKQ09666 5890 aaKnown RBP0.43□□□□□ -2.34
VPS41-212ENST00000482217 PHGR1C9JFL3 82 aa0.42□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 91.3 ms