RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 KRTAP4-6Q9BYQ5 205 aa4.09□□□□□ -1.75
TTC28-206ENST00000480563 V9GYY9 64 aa4.09□□□□□ -1.75
TTC28-206ENST00000480563 KRTAP5-4Q6L8H1 288 aa4.08□□□□□ -1.76
TTC28-206ENST00000480563 SPINT4Q6UDR6 99 aa4.08□□□□□ -1.76
TTC28-206ENST00000480563 MT1MQ8N339 61 aa4.05□□□□□ -1.76
TTC28-206ENST00000480563 UQCR11O14957 56 aa4.04□□□□□ -1.76
TTC28-206ENST00000480563 KRTAP19-5Q3LI72 72 aa4.04□□□□□ -1.76
TTC28-206ENST00000480563 KRTAP5-3Q6L8H2 238 aa4.03□□□□□ -1.76
TTC28-206ENST00000480563 A8MU10 97 aa4.01□□□□□ -1.77
TTC28-206ENST00000480563 KRTAP12-1P59990 96 aa4.01□□□□□ -1.77
TTC28-206ENST00000480563 Q1T7F1 81 aa3.99□□□□□ -1.77
TTC28-206ENST00000480563 KRTAP4-3Q9BYR4 195 aa3.99□□□□□ -1.77
TTC28-206ENST00000480563 MT1LQ93083 61 aa3.97□□□□□ -1.77
TTC28-206ENST00000480563 SPRR5A0A1B0GTR4 108 aa3.96□□□□□ -1.78
TTC28-206ENST00000480563 PSPHP1O15172 72 aa3.96□□□□□ -1.78
TTC28-206ENST00000480563 MIR22HGQ0VDD5 57 aa3.96□□□□□ -1.78
TTC28-206ENST00000480563 RPS28P62857 69 aaKnown RBP3.95□□□□□ -1.78
TTC28-206ENST00000480563 K7ERS5 55 aa3.94□□□□□ -1.78
TTC28-206ENST00000480563 A6NED7 52 aa3.89□□□□□ -1.79
TTC28-206ENST00000480563 KRTAP20-2Q3LI61 65 aa3.88□□□□□ -1.79
TTC28-206ENST00000480563 TNP1P09430 55 aa3.85□□□□□ -1.79
TTC28-206ENST00000480563 C10orf95Q9H7T3 257 aa3.8□□□□□ -1.8
TTC28-206ENST00000480563 KRTAP4-7Q9BYR0 210 aa3.78□□□□□ -1.8
TTC28-206ENST00000480563 LCE3AQ5TA76 89 aa3.76□□□□□ -1.81
TTC28-206ENST00000480563 KRTAP12-4P60329 112 aa3.75□□□□□ -1.81
TTC28-206ENST00000480563 KRTAP5-5Q701N2 237 aaPredicted RBP3.74□□□□□ -1.81
TTC28-206ENST00000480563 CDC42SE1Q9NRR8 79 aa3.73□□□□□ -1.81
TTC28-206ENST00000480563 KRTAP25-1Q3LHN0 102 aa3.72□□□□□ -1.81
TTC28-206ENST00000480563 SYNE1Q8NF91 8797 aaKnown RBP3.7□□□□□ -1.82
TTC28-206ENST00000480563 AHNAKQ09666 5890 aaKnown RBP3.66□□□□□ -1.82
TTC28-206ENST00000480563 KRTAP4-11Q9BYQ6 195 aa3.64□□□□□ -1.83
TTC28-206ENST00000480563 ROMO1P60602 79 aa3.63□□□□□ -1.83
TTC28-206ENST00000480563 KRTAP12-3P60328 96 aa3.62□□□□□ -1.83
TTC28-206ENST00000480563 MUC5ACP98088 5654 aa3.61□□□□□ -1.83
TTC28-206ENST00000480563 LOC100996750A0A140TA64 210 aa3.6□□□□□ -1.83
TTC28-206ENST00000480563 MUC5BQ9HC84 5762 aaPredicted RBP3.58□□□□□ -1.84
TTC28-206ENST00000480563 KRTAP23-1A1A580 65 aa3.58□□□□□ -1.84
TTC28-206ENST00000480563 BRK1Q8WUW1 75 aa3.56□□□□□ -1.84
TTC28-206ENST00000480563 KRTAP5-8O75690 187 aa3.52□□□□□ -1.85
TTC28-206ENST00000480563 KRTAP5-2Q701N4 177 aa3.5□□□□□ -1.85
TTC28-206ENST00000480563 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
TTC28-206ENST00000480563 KRTAP19-4Q3LI73 84 aa3.43□□□□□ -1.86
TTC28-206ENST00000480563 KRTAP15-1Q3LI76 137 aa3.41□□□□□ -1.86
TTC28-206ENST00000480563 KRTAP9-9Q9BYP9 154 aa3.41□□□□□ -1.86
TTC28-206ENST00000480563 KRTAP6-1Q3LI64 71 aa3.38□□□□□ -1.87
TTC28-206ENST00000480563 MT1AP04731 61 aa3.37□□□□□ -1.87
TTC28-206ENST00000480563 PMAIP1Q13794 54 aa3.34□□□□□ -1.87
TTC28-206ENST00000480563 KRTAP6-2Q3LI66 62 aa3.31□□□□□ -1.88
TTC28-206ENST00000480563 KRTAP9-4Q9BYQ2 154 aa3.31□□□□□ -1.88
TTC28-206ENST00000480563 LCE3CQ5T5A8 94 aa3.3□□□□□ -1.88
TTC28-206ENST00000480563 PRO0628Q9UI54 55 aa3.27□□□□□ -1.89
TTC28-206ENST00000480563 KRTAP5-1Q6L8H4 278 aa3.21□□□□□ -1.9
TTC28-206ENST00000480563 KRTAP9-6A8MVA2 160 aa3.12□□□□□ -1.91
TTC28-206ENST00000480563 PRAC1Q96KF2 57 aa3.12□□□□□ -1.91
TTC28-206ENST00000480563 MT3P25713 68 aa3.11□□□□□ -1.91
TTC28-206ENST00000480563 KTN1-AS1Q86SY8 53 aa3.09□□□□□ -1.91
TTC28-206ENST00000480563 LCE1EQ5T753 118 aa2.94□□□□□ -1.94
TTC28-206ENST00000480563 H3BS24 57 aa2.83□□□□□ -1.96
TTC28-206ENST00000480563 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
TTC28-206ENST00000480563 KRTAP4-2Q9BYR5 136 aa2.81□□□□□ -1.96
TTC28-206ENST00000480563 LUZP6Q538Z0 58 aa2.73□□□□□ -1.97
TTC28-206ENST00000480563 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
TTC28-206ENST00000480563 KRTAP4-12Q9BQ66 201 aa2.71□□□□□ -1.98
TTC28-206ENST00000480563 KRTAP5-11Q6L8G4 156 aa2.55□□□□□ -2
TTC28-206ENST00000480563 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
TTC28-206ENST00000480563 A0A0A0MQY5 61 aa2.5□□□□□ -2.01
TTC28-206ENST00000480563 PHGR1C9JFL3 82 aa2.48□□□□□ -2.01
TTC28-206ENST00000480563 LCE3DQ9BYE3 92 aa2.43□□□□□ -2.02
TTC28-206ENST00000480563 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.42□□□□□ -2.02
TTC28-206ENST00000480563 NDUFAF8A1L188 74 aa2.37□□□□□ -2.03
TTC28-206ENST00000480563 LCE3EQ5T5B0 92 aa2.33□□□□□ -2.04
TTC28-206ENST00000480563 KRTAP21-2Q3LI59 83 aa2.23□□□□□ -2.05
TTC28-206ENST00000480563 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
TTC28-206ENST00000480563 KRTAP4-4Q9BYR3 166 aa2.12□□□□□ -2.07
TTC28-206ENST00000480563 INE1O15225 51 aa1.98□□□□□ -2.09
TTC28-206ENST00000480563 KRTAP21-1Q3LI58 79 aa1.88□□□□□ -2.11
TTC28-206ENST00000480563 PRM1P04553 51 aa1.85□□□□□ -2.11
TTC28-206ENST00000480563 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 83.9 ms