RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 MT1BP07438 61 aa2.89□□□□□ -1.95
USP48-208ENST00000479177 CDC42SE1Q9NRR8 79 aa2.88□□□□□ -1.95
USP48-208ENST00000479177 CRCT1Q9UGL9 99 aa2.88□□□□□ -1.95
USP48-208ENST00000479177 KRTAP12-1P59990 96 aa2.87□□□□□ -1.95
USP48-208ENST00000479177 FSIP2Q5CZC0 6907 aa2.86□□□□□ -1.95
USP48-208ENST00000479177 KRTAP5-5Q701N2 237 aaPredicted RBP2.85□□□□□ -1.95
USP48-208ENST00000479177 SSPOA2VEC9 5147 aa2.84□□□□□ -1.96
USP48-208ENST00000479177 SPINT4Q6UDR6 99 aa2.83□□□□□ -1.96
USP48-208ENST00000479177 BRK1Q8WUW1 75 aa2.83□□□□□ -1.96
USP48-208ENST00000479177 PLAC4Q8WY50 150 aa2.83□□□□□ -1.96
USP48-208ENST00000479177 K7ERS5 55 aa2.79□□□□□ -1.96
USP48-208ENST00000479177 CAMK2N1Q7Z7J9 78 aa2.78□□□□□ -1.96
USP48-208ENST00000479177 MT1XP80297 61 aa2.77□□□□□ -1.97
USP48-208ENST00000479177 KRTAP19-6Q3LI70 58 aa2.76□□□□□ -1.97
USP48-208ENST00000479177 PRO0628Q9UI54 55 aa2.74□□□□□ -1.97
USP48-208ENST00000479177 KRTAP5-8O75690 187 aa2.73□□□□□ -1.97
USP48-208ENST00000479177 PRO2289Q9P1D8 64 aa2.73□□□□□ -1.97
USP48-208ENST00000479177 C10orf95Q9H7T3 257 aa2.72□□□□□ -1.97
USP48-208ENST00000479177 FCGBPQ9Y6R7 5405 aaPredicted RBP2.71□□□□□ -1.98
USP48-208ENST00000479177 LCE1CQ5T751 118 aa2.69□□□□□ -1.98
USP48-208ENST00000479177 LCE1BQ5T7P3 118 aa2.69□□□□□ -1.98
USP48-208ENST00000479177 ROMO1P60602 79 aa2.68□□□□□ -1.98
USP48-208ENST00000479177 PMAIP1Q13794 54 aa2.66□□□□□ -1.98
USP48-208ENST00000479177 TNP1P09430 55 aa2.63□□□□□ -1.99
USP48-208ENST00000479177 KRTAP25-1Q3LHN0 102 aa2.63□□□□□ -1.99
USP48-208ENST00000479177 MACF1Q9UPN3 7388 aaKnown RBP2.58□□□□□ -2
USP48-208ENST00000479177 SYNE2Q8WXH0 6885 aaKnown RBP2.57□□□□□ -2
USP48-208ENST00000479177 KTN1-AS1Q86SY8 53 aa2.55□□□□□ -2
USP48-208ENST00000479177 KMT2DO14686 5537 aa2.54□□□□□ -2
USP48-208ENST00000479177 KRTAP6-3Q3LI67 103 aa2.53□□□□□ -2
USP48-208ENST00000479177 LCE3DQ9BYE3 92 aa2.52□□□□□ -2.01
USP48-208ENST00000479177 PP632Q6XCG6 107 aa2.51□□□□□ -2.01
USP48-208ENST00000479177 KRTAP8-1Q8IUC2 63 aa2.51□□□□□ -2.01
USP48-208ENST00000479177 KRTAP19-5Q3LI72 72 aa2.48□□□□□ -2.01
USP48-208ENST00000479177 KRTAP19-7Q3SYF9 63 aa2.47□□□□□ -2.01
USP48-208ENST00000479177 KRTAP12-3P60328 96 aa2.45□□□□□ -2.02
USP48-208ENST00000479177 MT1EP04732 61 aa2.44□□□□□ -2.02
USP48-208ENST00000479177 NEBP20929 6669 aa2.43□□□□□ -2.02
USP48-208ENST00000479177 SPRR2FQ96RM1 72 aa2.43□□□□□ -2.02
USP48-208ENST00000479177 MUC12Q9UKN1 5478 aa2.42□□□□□ -2.02
USP48-208ENST00000479177 MT1LQ93083 61 aa2.38□□□□□ -2.03
USP48-208ENST00000479177 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
USP48-208ENST00000479177 MDN1Q9NU22 5596 aa2.36□□□□□ -2.03
USP48-208ENST00000479177 KRTAP19-3Q7Z4W3 81 aa2.35□□□□□ -2.03
USP48-208ENST00000479177 SPRR2EP22531 72 aa2.33□□□□□ -2.04
USP48-208ENST00000479177 SPRR2BP35325 72 aa2.33□□□□□ -2.04
USP48-208ENST00000479177 SPRR2AP35326 72 aa2.33□□□□□ -2.04
USP48-208ENST00000479177 KRTAP20-1Q3LI63 56 aa2.32□□□□□ -2.04
USP48-208ENST00000479177 MT1GP13640 62 aa2.31□□□□□ -2.04
USP48-208ENST00000479177 MT1MQ8N339 61 aa2.3□□□□□ -2.04
USP48-208ENST00000479177 KRTAP2-3P0C7H8 128 aa2.27□□□□□ -2.05
USP48-208ENST00000479177 KRTAP2-4Q9BYR9 128 aa2.27□□□□□ -2.05
USP48-208ENST00000479177 SPRR2DP22532 72 aa2.25□□□□□ -2.05
USP48-208ENST00000479177 KRTAP5-7Q6L8G8 165 aa2.23□□□□□ -2.05
USP48-208ENST00000479177 SPRR5A0A1B0GTR4 108 aa2.21□□□□□ -2.06
USP48-208ENST00000479177 KRTAP2-1Q9BYU5 128 aa2.19□□□□□ -2.06
USP48-208ENST00000479177 DSTQ03001 7570 aaKnown RBP2.16□□□□□ -2.06
USP48-208ENST00000479177 LUZP6Q538Z0 58 aa2.12□□□□□ -2.07
USP48-208ENST00000479177 MT1AP04731 61 aa2.02□□□□□ -2.09
USP48-208ENST00000479177 KRTAP6-1Q3LI64 71 aa2□□□□□ -2.09
USP48-208ENST00000479177 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
USP48-208ENST00000479177 SYNE1Q8NF91 8797 aaKnown RBP1.97□□□□□ -2.09
USP48-208ENST00000479177 HMCN1Q96RW7 5635 aa1.97□□□□□ -2.09
USP48-208ENST00000479177 MT4P47944 62 aa1.94□□□□□ -2.1
USP48-208ENST00000479177 GPR98Q8WXG9 6306 aa1.94□□□□□ -2.1
USP48-208ENST00000479177 KRTAP12-4P60329 112 aa1.93□□□□□ -2.1
USP48-208ENST00000479177 KRTAP20-2Q3LI61 65 aa1.9□□□□□ -2.11
USP48-208ENST00000479177 AHNAK2Q8IVF2 5795 aa1.87□□□□□ -2.11
USP48-208ENST00000479177 KRTAP6-2Q3LI66 62 aa1.85□□□□□ -2.11
USP48-208ENST00000479177 KRTAP5-10Q6L8G5 202 aa1.84□□□□□ -2.11
USP48-208ENST00000479177 INE1O15225 51 aa1.79□□□□□ -2.12
USP48-208ENST00000479177 MUC5ACP98088 5654 aa1.6□□□□□ -2.15
USP48-208ENST00000479177 MUC5BQ9HC84 5762 aaPredicted RBP1.57□□□□□ -2.16
USP48-208ENST00000479177 AHNAKQ09666 5890 aaKnown RBP1.56□□□□□ -2.16
USP48-208ENST00000479177 PRM1P04553 51 aa1.39□□□□□ -2.19
USP48-208ENST00000479177 PHGR1C9JFL3 82 aa1.15□□□□□ -2.23
USP48-208ENST00000479177 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.26
USP48-208ENST00000479177 KRTAP21-1Q3LI58 79 aa0.84□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 152.2 ms