RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MT1LQ93083 61 aa5.57□□□□□ -1.52
HMGA1-206ENST00000478214 K7ERS5 55 aa5.53□□□□□ -1.52
HMGA1-206ENST00000478214 PP632Q6XCG6 107 aa5.53□□□□□ -1.52
HMGA1-206ENST00000478214 MT1MQ8N339 61 aa5.51□□□□□ -1.53
HMGA1-206ENST00000478214 GPR98Q8WXG9 6306 aa5.5□□□□□ -1.53
HMGA1-206ENST00000478214 PCP4P48539 62 aa5.49□□□□□ -1.53
HMGA1-206ENST00000478214 A6NED7 52 aa5.46□□□□□ -1.54
HMGA1-206ENST00000478214 KRTAP25-1Q3LHN0 102 aa5.46□□□□□ -1.54
HMGA1-206ENST00000478214 KRTAP12-3P60328 96 aa5.45□□□□□ -1.54
HMGA1-206ENST00000478214 RPS28P62857 69 aaKnown RBP5.44□□□□□ -1.54
HMGA1-206ENST00000478214 KRTAP4-3Q9BYR4 195 aa5.4□□□□□ -1.54
HMGA1-206ENST00000478214 KRTAP4-9Q9BYQ8 210 aa5.33□□□□□ -1.56
HMGA1-206ENST00000478214 KRTAP4-7Q9BYR0 210 aa5.32□□□□□ -1.56
HMGA1-206ENST00000478214 CDC42SE1Q9NRR8 79 aa5.26□□□□□ -1.57
HMGA1-206ENST00000478214 KRTAP23-1A1A580 65 aa5.24□□□□□ -1.57
HMGA1-206ENST00000478214 LCE4AQ5TA78 99 aa5.24□□□□□ -1.57
HMGA1-206ENST00000478214 LCE1DQ5T752 114 aa5.22□□□□□ -1.57
HMGA1-206ENST00000478214 ROMO1P60602 79 aa5.2□□□□□ -1.58
HMGA1-206ENST00000478214 HMCN1Q96RW7 5635 aa5.19□□□□□ -1.58
HMGA1-206ENST00000478214 MT4P47944 62 aa5.18□□□□□ -1.58
HMGA1-206ENST00000478214 KRTAP5-4Q6L8H1 288 aa5.17□□□□□ -1.58
HMGA1-206ENST00000478214 KRTAP15-1Q3LI76 137 aa5.14□□□□□ -1.59
HMGA1-206ENST00000478214 KRTAP19-4Q3LI73 84 aa5.1□□□□□ -1.59
HMGA1-206ENST00000478214 KRTAP4-6Q9BYQ5 205 aa5.06□□□□□ -1.6
HMGA1-206ENST00000478214 KRTAP5-5Q701N2 237 aaPredicted RBP5.04□□□□□ -1.6
HMGA1-206ENST00000478214 LOC100996750A0A140TA64 210 aa5.03□□□□□ -1.6
HMGA1-206ENST00000478214 LCE3CQ5T5A8 94 aa5.03□□□□□ -1.6
HMGA1-206ENST00000478214 AHNAK2Q8IVF2 5795 aa5□□□□□ -1.61
HMGA1-206ENST00000478214 SYNE1Q8NF91 8797 aaKnown RBP4.95□□□□□ -1.62
HMGA1-206ENST00000478214 KRTAP20-2Q3LI61 65 aa4.88□□□□□ -1.63
HMGA1-206ENST00000478214 KRTAP12-4P60329 112 aa4.86□□□□□ -1.63
HMGA1-206ENST00000478214 SPRR5A0A1B0GTR4 108 aa4.85□□□□□ -1.63
HMGA1-206ENST00000478214 BRK1Q8WUW1 75 aa4.81□□□□□ -1.64
HMGA1-206ENST00000478214 KRTAP5-10Q6L8G5 202 aa4.8□□□□□ -1.64
HMGA1-206ENST00000478214 KRTAP9-6A8MVA2 160 aa4.77□□□□□ -1.65
HMGA1-206ENST00000478214 MT1AP04731 61 aa4.73□□□□□ -1.65
HMGA1-206ENST00000478214 KRTAP5-7Q6L8G8 165 aa4.73□□□□□ -1.65
HMGA1-206ENST00000478214 KRTAP5-3Q6L8H2 238 aa4.73□□□□□ -1.65
HMGA1-206ENST00000478214 KRTAP6-1Q3LI64 71 aa4.71□□□□□ -1.66
HMGA1-206ENST00000478214 KRTAP5-2Q701N4 177 aa4.55□□□□□ -1.68
HMGA1-206ENST00000478214 KRTAP9-4Q9BYQ2 154 aa4.55□□□□□ -1.68
HMGA1-206ENST00000478214 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
HMGA1-206ENST00000478214 KRTAP6-2Q3LI66 62 aa4.47□□□□□ -1.69
HMGA1-206ENST00000478214 KRTAP4-11Q9BYQ6 195 aa4.42□□□□□ -1.7
HMGA1-206ENST00000478214 PRAC1Q96KF2 57 aa4.37□□□□□ -1.71
HMGA1-206ENST00000478214 MT3P25713 68 aa4.32□□□□□ -1.72
HMGA1-206ENST00000478214 OBSCNQ5VST9 7968 aa4.29□□□□□ -1.72
HMGA1-206ENST00000478214 KRTAP5-8O75690 187 aa4.27□□□□□ -1.73
HMGA1-206ENST00000478214 PRO0628Q9UI54 55 aa4.25□□□□□ -1.73
HMGA1-206ENST00000478214 AHNAKQ09666 5890 aaKnown RBP4.15□□□□□ -1.74
HMGA1-206ENST00000478214 MUC5BQ9HC84 5762 aaPredicted RBP4.09□□□□□ -1.75
HMGA1-206ENST00000478214 MUC5ACP98088 5654 aa4.09□□□□□ -1.76
HMGA1-206ENST00000478214 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
HMGA1-206ENST00000478214 KTN1-AS1Q86SY8 53 aa4.05□□□□□ -1.76
HMGA1-206ENST00000478214 KRTAP9-9Q9BYP9 154 aa4.01□□□□□ -1.77
HMGA1-206ENST00000478214 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
HMGA1-206ENST00000478214 SVIPQ8NHG7 77 aa3.89□□□□□ -1.79
HMGA1-206ENST00000478214 KRTAP4-2Q9BYR5 136 aa3.72□□□□□ -1.81
HMGA1-206ENST00000478214 LCE1BQ5T7P3 118 aa3.71□□□□□ -1.82
HMGA1-206ENST00000478214 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.83
HMGA1-206ENST00000478214 LCE1CQ5T751 118 aa3.64□□□□□ -1.83
HMGA1-206ENST00000478214 LUZP6Q538Z0 58 aa3.62□□□□□ -1.83
HMGA1-206ENST00000478214 LCE3EQ5T5B0 92 aa3.45□□□□□ -1.86
HMGA1-206ENST00000478214 KRTAP4-12Q9BQ66 201 aa3.34□□□□□ -1.87
HMGA1-206ENST00000478214 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.32□□□□□ -1.88
HMGA1-206ENST00000478214 KRTAP5-11Q6L8G4 156 aa3.29□□□□□ -1.88
HMGA1-206ENST00000478214 LCE1FQ5T754 118 aa3.15□□□□□ -1.91
HMGA1-206ENST00000478214 KRTAP21-2Q3LI59 83 aa3.1□□□□□ -1.91
HMGA1-206ENST00000478214 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
HMGA1-206ENST00000478214 PHGR1C9JFL3 82 aa2.9□□□□□ -1.95
HMGA1-206ENST00000478214 KRTAP4-4Q9BYR3 166 aa2.84□□□□□ -1.95
HMGA1-206ENST00000478214 MUC19Q7Z5P9 8384 aa2.67□□□□□ -1.98
HMGA1-206ENST00000478214 PRM1P04553 51 aa2.67□□□□□ -1.98
HMGA1-206ENST00000478214 INE1O15225 51 aa2.39□□□□□ -2.03
HMGA1-206ENST00000478214 A0A0A0MQY5 61 aa2.37□□□□□ -2.03
HMGA1-206ENST00000478214 H3BS24 57 aa2.22□□□□□ -2.05
HMGA1-206ENST00000478214 KRTAP21-1Q3LI58 79 aa2.2□□□□□ -2.06
HMGA1-206ENST00000478214 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 5.7 ms