RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 KRTAP4-8A0A0G2JLE6 195 aa6.47□□□□□ -1.37
CCM2-209ENST00000477605 KRTAP4-8Q9BYQ9 185 aa6.47□□□□□ -1.37
CCM2-209ENST00000477605 KRTAP19-7Q3SYF9 63 aa6.43□□□□□ -1.38
CCM2-209ENST00000477605 KRTAP9-6A8MVA2 160 aa6.33□□□□□ -1.4
CCM2-209ENST00000477605 MUC12Q9UKN1 5478 aa6.31□□□□□ -1.4
CCM2-209ENST00000477605 MT1LQ93083 61 aa6.27□□□□□ -1.41
CCM2-209ENST00000477605 NEBP20929 6669 aa6.27□□□□□ -1.41
CCM2-209ENST00000477605 MT1EP04732 61 aa6.26□□□□□ -1.41
CCM2-209ENST00000477605 KRTAP2-3P0C7H8 128 aa6.25□□□□□ -1.41
CCM2-209ENST00000477605 KRTAP2-4Q9BYR9 128 aa6.25□□□□□ -1.41
CCM2-209ENST00000477605 KRTAP2-1Q9BYU5 128 aa6.25□□□□□ -1.41
CCM2-209ENST00000477605 KMT2DO14686 5537 aa6.23□□□□□ -1.41
CCM2-209ENST00000477605 KRTAP5-9P26371 169 aa6.21□□□□□ -1.42
CCM2-209ENST00000477605 KRTAP4-7Q9BYR0 210 aa6.18□□□□□ -1.42
CCM2-209ENST00000477605 MDN1Q9NU22 5596 aa6.12□□□□□ -1.43
CCM2-209ENST00000477605 SPRR2FQ96RM1 72 aa6.02□□□□□ -1.45
CCM2-209ENST00000477605 KRTAP20-1Q3LI63 56 aa5.96□□□□□ -1.46
CCM2-209ENST00000477605 SPRR2EP22531 72 aa5.92□□□□□ -1.46
CCM2-209ENST00000477605 SPRR2BP35325 72 aa5.92□□□□□ -1.46
CCM2-209ENST00000477605 SPRR2AP35326 72 aa5.92□□□□□ -1.46
CCM2-209ENST00000477605 MT1GP13640 62 aa5.88□□□□□ -1.47
CCM2-209ENST00000477605 LCE1AQ5T7P2 110 aa5.86□□□□□ -1.47
CCM2-209ENST00000477605 KRTAP19-3Q7Z4W3 81 aa5.86□□□□□ -1.47
CCM2-209ENST00000477605 MT1MQ8N339 61 aa5.84□□□□□ -1.47
CCM2-209ENST00000477605 KRTAP4-3Q9BYR4 195 aa5.78□□□□□ -1.48
CCM2-209ENST00000477605 LOC100996750A0A140TA64 210 aa5.76□□□□□ -1.49
CCM2-209ENST00000477605 SPRR2DP22532 72 aa5.71□□□□□ -1.49
CCM2-209ENST00000477605 LCE5AQ5TCM9 118 aa5.65□□□□□ -1.5
CCM2-209ENST00000477605 KRTAP2-2Q9BYT5 123 aa5.65□□□□□ -1.51
CCM2-209ENST00000477605 LCE3BQ5TA77 95 aa5.57□□□□□ -1.52
CCM2-209ENST00000477605 KRTAP12-4P60329 112 aa5.47□□□□□ -1.53
CCM2-209ENST00000477605 DSTQ03001 7570 aaKnown RBP5.45□□□□□ -1.54
CCM2-209ENST00000477605 MT1AP04731 61 aa5.38□□□□□ -1.55
CCM2-209ENST00000477605 KRTAP6-1Q3LI64 71 aa5.27□□□□□ -1.57
CCM2-209ENST00000477605 KRTAP5-5Q701N2 237 aaPredicted RBP5.19□□□□□ -1.58
CCM2-209ENST00000477605 KRTAP4-9Q9BYQ8 210 aa5.18□□□□□ -1.58
CCM2-209ENST00000477605 LCE3DQ9BYE3 92 aa5.14□□□□□ -1.59
CCM2-209ENST00000477605 LCE3EQ5T5B0 92 aa5.1□□□□□ -1.59
CCM2-209ENST00000477605 LCE1DQ5T752 114 aa5.06□□□□□ -1.6
CCM2-209ENST00000477605 LCE4AQ5TA78 99 aa5.06□□□□□ -1.6
CCM2-209ENST00000477605 HMCN1Q96RW7 5635 aa5.01□□□□□ -1.61
CCM2-209ENST00000477605 MT4P47944 62 aa5□□□□□ -1.61
CCM2-209ENST00000477605 KRTAP5-4Q6L8H1 288 aa5□□□□□ -1.61
CCM2-209ENST00000477605 GPR98Q8WXG9 6306 aa4.99□□□□□ -1.61
CCM2-209ENST00000477605 SYNE1Q8NF91 8797 aaKnown RBP4.99□□□□□ -1.61
CCM2-209ENST00000477605 KRTAP9-4Q9BYQ2 154 aa4.98□□□□□ -1.61
CCM2-209ENST00000477605 KRTAP4-6Q9BYQ5 205 aa4.88□□□□□ -1.63
CCM2-209ENST00000477605 PRM1P04553 51 aa4.81□□□□□ -1.64
CCM2-209ENST00000477605 AHNAK2Q8IVF2 5795 aa4.8□□□□□ -1.64
CCM2-209ENST00000477605 MT3P25713 68 aa4.78□□□□□ -1.64
CCM2-209ENST00000477605 KRTAP6-2Q3LI66 62 aa4.71□□□□□ -1.65
CCM2-209ENST00000477605 KRTAP20-2Q3LI61 65 aa4.71□□□□□ -1.66
CCM2-209ENST00000477605 KRTAP5-10Q6L8G5 202 aa4.68□□□□□ -1.66
CCM2-209ENST00000477605 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
CCM2-209ENST00000477605 KRTAP5-7Q6L8G8 165 aa4.48□□□□□ -1.69
CCM2-209ENST00000477605 KRTAP5-2Q701N4 177 aa4.39□□□□□ -1.71
CCM2-209ENST00000477605 OBSCNQ5VST9 7968 aa4.29□□□□□ -1.72
CCM2-209ENST00000477605 KRTAP4-11Q9BYQ6 195 aa4.28□□□□□ -1.72
CCM2-209ENST00000477605 KRTAP5-8O75690 187 aa4.15□□□□□ -1.75
CCM2-209ENST00000477605 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
CCM2-209ENST00000477605 LCE1EQ5T753 118 aa3.95□□□□□ -1.78
CCM2-209ENST00000477605 KRTAP5-1Q6L8H4 278 aa3.93□□□□□ -1.78
CCM2-209ENST00000477605 AHNAKQ09666 5890 aaKnown RBP3.92□□□□□ -1.78
CCM2-209ENST00000477605 MUC5ACP98088 5654 aa3.92□□□□□ -1.78
CCM2-209ENST00000477605 KRTAP9-9Q9BYP9 154 aa3.9□□□□□ -1.79
CCM2-209ENST00000477605 LCE1BQ5T7P3 118 aa3.72□□□□□ -1.81
CCM2-209ENST00000477605 LCE1CQ5T751 118 aa3.7□□□□□ -1.82
CCM2-209ENST00000477605 KRTAP4-2Q9BYR5 136 aa3.65□□□□□ -1.83
CCM2-209ENST00000477605 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.53□□□□□ -1.84
CCM2-209ENST00000477605 KRTAP21-2Q3LI59 83 aa3.43□□□□□ -1.86
CCM2-209ENST00000477605 KRTAP4-12Q9BQ66 201 aa3.21□□□□□ -1.9
CCM2-209ENST00000477605 KRTAP5-11Q6L8G4 156 aa3.18□□□□□ -1.9
CCM2-209ENST00000477605 KRTAP21-1Q3LI58 79 aa3.1□□□□□ -1.91
CCM2-209ENST00000477605 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
CCM2-209ENST00000477605 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
CCM2-209ENST00000477605 PHGR1C9JFL3 82 aa2.73□□□□□ -1.97
CCM2-209ENST00000477605 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
CCM2-209ENST00000477605 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 59.5 ms