RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	PRO2289	Q9P1D8	64 aa		3.02	□□□□□ -1.93
HDAC9-223	ENST00000476135	AHNAK2	Q8IVF2	5795 aa		3.01	□□□□□ -1.93
HDAC9-223	ENST00000476135	C20orf197	Q8N268	126 aa		3.01	□□□□□ -1.93
HDAC9-223	ENST00000476135	SNURF	Q9Y675	71 aa		3	□□□□□ -1.93
HDAC9-223	ENST00000476135	HMCN1	Q96RW7	5635 aa		2.99	□□□□□ -1.93
HDAC9-223	ENST00000476135	COX7C	P15954	63 aa		2.98	□□□□□ -1.93
HDAC9-223	ENST00000476135	LINC01554	Q52M75	96 aa		2.98	□□□□□ -1.93
HDAC9-223	ENST00000476135	ACYP2	P14621	99 aa		2.97	□□□□□ -1.93
HDAC9-223	ENST00000476135	MT1X	P80297	61 aa		2.97	□□□□□ -1.93
HDAC9-223	ENST00000476135	LCE3E	Q5T5B0	92 aa		2.97	□□□□□ -1.93
HDAC9-223	ENST00000476135	SPTSSB	Q8NFR3	76 aa		2.96	□□□□□ -1.94
HDAC9-223	ENST00000476135		H0YAA0	97 aa		2.95	□□□□□ -1.94
HDAC9-223	ENST00000476135	CHKB-CPT1B	H3BT56	60 aa		2.95	□□□□□ -1.94
HDAC9-223	ENST00000476135	LCE3A	Q5TA76	89 aa		2.94	□□□□□ -1.94
HDAC9-223	ENST00000476135	CRIPT	Q9P021	101 aa		2.94	□□□□□ -1.94
HDAC9-223	ENST00000476135	SPRR5	A0A1B0GTR4	108 aa		2.92	□□□□□ -1.94
HDAC9-223	ENST00000476135		A0A1B0GU33	70 aa		2.92	□□□□□ -1.94
HDAC9-223	ENST00000476135	MT4	P47944	62 aa		2.9	□□□□□ -1.95
HDAC9-223	ENST00000476135		H7BZZ5	65 aa		2.89	□□□□□ -1.95
HDAC9-223	ENST00000476135	SPINT4	Q6UDR6	99 aa		2.89	□□□□□ -1.95
HDAC9-223	ENST00000476135	COA5	Q86WW8	74 aa		2.88	□□□□□ -1.95
HDAC9-223	ENST00000476135	CCDC179	H3BU77	68 aa		2.86	□□□□□ -1.95
HDAC9-223	ENST00000476135	ATP5E	P56381	51 aa	Predicted RBP	2.86	□□□□□ -1.95
HDAC9-223	ENST00000476135	CYSTM1	Q9H1C7	97 aa		2.86	□□□□□ -1.95
HDAC9-223	ENST00000476135	KRTAP25-1	Q3LHN0	102 aa		2.85	□□□□□ -1.95
HDAC9-223	ENST00000476135		R4GN34	69 aa		2.85	□□□□□ -1.95
HDAC9-223	ENST00000476135	KRTAP5-2	Q701N4	177 aa		2.84	□□□□□ -1.95
HDAC9-223	ENST00000476135		M0QZ58	72 aa		2.83	□□□□□ -1.96
HDAC9-223	ENST00000476135		P0C880	135 aa		2.83	□□□□□ -1.96
HDAC9-223	ENST00000476135	BRK1	Q8WUW1	75 aa		2.83	□□□□□ -1.96
HDAC9-223	ENST00000476135	PLAC4	Q8WY50	150 aa		2.83	□□□□□ -1.96
HDAC9-223	ENST00000476135	TMEM258	P61165	79 aa		2.81	□□□□□ -1.96
HDAC9-223	ENST00000476135	SERP1	Q9Y6X1	66 aa		2.8	□□□□□ -1.96
HDAC9-223	ENST00000476135		A0A1B0GU69	56 aa		2.74	□□□□□ -1.97
HDAC9-223	ENST00000476135	KRTAP19-3	Q7Z4W3	81 aa		2.74	□□□□□ -1.97
HDAC9-223	ENST00000476135	PRR15L	Q9BU68	103 aa		2.73	□□□□□ -1.97
HDAC9-223	ENST00000476135		A8MU10	97 aa		2.72	□□□□□ -1.97
HDAC9-223	ENST00000476135	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.72	□□□□□ -1.97
HDAC9-223	ENST00000476135	ROMO1	P60602	79 aa		2.71	□□□□□ -1.98
HDAC9-223	ENST00000476135	KRTAP13-4	Q3LI77	160 aa		2.69	□□□□□ -1.98
HDAC9-223	ENST00000476135	LINC01558	Q9Y6Z2	57 aa		2.68	□□□□□ -1.98
HDAC9-223	ENST00000476135	MT1E	P04732	61 aa		2.67	□□□□□ -1.98
HDAC9-223	ENST00000476135		A0A0D9SG42	100 aa		2.66	□□□□□ -1.98
HDAC9-223	ENST00000476135	KRTAP19-7	Q3SYF9	63 aa		2.66	□□□□□ -1.98
HDAC9-223	ENST00000476135	SPATA8	Q6RVD6	105 aa		2.66	□□□□□ -1.98
HDAC9-223	ENST00000476135	AHNAK	Q09666	5890 aa	Known RBP	2.66	□□□□□ -1.98
HDAC9-223	ENST00000476135	MT1G	P13640	62 aa		2.64	□□□□□ -1.99
HDAC9-223	ENST00000476135	KRTAP20-2	Q3LI61	65 aa		2.62	□□□□□ -1.99
HDAC9-223	ENST00000476135	PP632	Q6XCG6	107 aa		2.62	□□□□□ -1.99
HDAC9-223	ENST00000476135	UQCR11	O14957	56 aa		2.61	□□□□□ -1.99
HDAC9-223	ENST00000476135	MUC5AC	P98088	5654 aa		2.59	□□□□□ -1.99
HDAC9-223	ENST00000476135	KRTAP12-1	P59990	96 aa		2.59	□□□□□ -1.99
HDAC9-223	ENST00000476135		Q1T7F1	81 aa		2.59	□□□□□ -1.99
HDAC9-223	ENST00000476135	MT1M	Q8N339	61 aa		2.57	□□□□□ -2
HDAC9-223	ENST00000476135	MIR22HG	Q0VDD5	57 aa		2.56	□□□□□ -2
HDAC9-223	ENST00000476135	LCE1C	Q5T751	118 aa		2.56	□□□□□ -2
HDAC9-223	ENST00000476135	LCE1B	Q5T7P3	118 aa		2.56	□□□□□ -2
HDAC9-223	ENST00000476135	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.53	□□□□□ -2
HDAC9-223	ENST00000476135	KRTAP5-8	O75690	187 aa		2.47	□□□□□ -2.01
HDAC9-223	ENST00000476135	TNP1	P09430	55 aa		2.47	□□□□□ -2.01
HDAC9-223	ENST00000476135	KRTAP12-4	P60329	112 aa		2.47	□□□□□ -2.01
HDAC9-223	ENST00000476135	KRTAP19-5	Q3LI72	72 aa		2.46	□□□□□ -2.02
HDAC9-223	ENST00000476135	MT1L	Q93083	61 aa		2.46	□□□□□ -2.02
HDAC9-223	ENST00000476135	C10orf95	Q9H7T3	257 aa		2.45	□□□□□ -2.02
HDAC9-223	ENST00000476135	CDC42SE1	Q9NRR8	79 aa		2.42	□□□□□ -2.02
HDAC9-223	ENST00000476135	SYNE1	Q8NF91	8797 aa	Known RBP	2.36	□□□□□ -2.03
HDAC9-223	ENST00000476135	INE1	O15225	51 aa		2.31	□□□□□ -2.04
HDAC9-223	ENST00000476135	LCE3D	Q9BYE3	92 aa		2.31	□□□□□ -2.04
HDAC9-223	ENST00000476135	KRTAP12-3	P60328	96 aa		2.3	□□□□□ -2.04
HDAC9-223	ENST00000476135	KRTAP6-1	Q3LI64	71 aa		2.1	□□□□□ -2.07
HDAC9-223	ENST00000476135	KRTAP6-2	Q3LI66	62 aa		2.1	□□□□□ -2.07
HDAC9-223	ENST00000476135	MUC19	Q7Z5P9	8384 aa		2.09	□□□□□ -2.07
HDAC9-223	ENST00000476135	MT1A	P04731	61 aa		2.09	□□□□□ -2.07
HDAC9-223	ENST00000476135	KRTAP21-2	Q3LI59	83 aa		1.85	□□□□□ -2.11
HDAC9-223	ENST00000476135	PHGR1	C9JFL3	82 aa		1.8	□□□□□ -2.12
HDAC9-223	ENST00000476135	KRTAP21-1	Q3LI58	79 aa		1.39	□□□□□ -2.19
HDAC9-223	ENST00000476135	PRM1	P04553	51 aa		1.2	□□□□□ -2.22
HDAC9-223	ENST00000476135	MUC16	Q8WXI7	14507 aa		1.01	□□□□□ -2.25

Retrieved 78 of 20,778 RNA–protein pairs in 55.2 ms