RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 HMCN1Q96RW7 5635 aa2.51□□□□□ -2.01
HDAC3-207ENST00000475549 SPINT4Q6UDR6 99 aa2.5□□□□□ -2.01
HDAC3-207ENST00000475549 MT1MQ8N339 61 aa2.5□□□□□ -2.01
HDAC3-207ENST00000475549 MT1LQ93083 61 aa2.5□□□□□ -2.01
HDAC3-207ENST00000475549 KRTAP4-3Q9BYR4 195 aa2.49□□□□□ -2.01
HDAC3-207ENST00000475549 A0A1B0GU33 70 aa2.48□□□□□ -2.01
HDAC3-207ENST00000475549 MT4P47944 62 aa2.48□□□□□ -2.01
HDAC3-207ENST00000475549 SERP1Q9Y6X1 66 aa2.47□□□□□ -2.01
HDAC3-207ENST00000475549 SEC61GP60059 68 aa2.46□□□□□ -2.02
HDAC3-207ENST00000475549 KRTAP5-4Q6L8H1 288 aa2.46□□□□□ -2.02
HDAC3-207ENST00000475549 PP632Q6XCG6 107 aa2.46□□□□□ -2.02
HDAC3-207ENST00000475549 LCE3AQ5TA76 89 aa2.44□□□□□ -2.02
HDAC3-207ENST00000475549 C10orf95Q9H7T3 257 aa2.44□□□□□ -2.02
HDAC3-207ENST00000475549 A8MU10 97 aa2.43□□□□□ -2.02
HDAC3-207ENST00000475549 H7BZZ5 65 aa2.43□□□□□ -2.02
HDAC3-207ENST00000475549 COX7CP15954 63 aa2.41□□□□□ -2.02
HDAC3-207ENST00000475549 KRTAP5-10Q6L8G5 202 aa2.41□□□□□ -2.02
HDAC3-207ENST00000475549 AHNAK2Q8IVF2 5795 aa2.4□□□□□ -2.02
HDAC3-207ENST00000475549 SMIM26A0A096LP01 95 aa2.37□□□□□ -2.03
HDAC3-207ENST00000475549 A0A1B0GU69 56 aa2.37□□□□□ -2.03
HDAC3-207ENST00000475549 TNP1P09430 55 aa2.37□□□□□ -2.03
HDAC3-207ENST00000475549 KRTAP12-3P60328 96 aa2.34□□□□□ -2.03
HDAC3-207ENST00000475549 KRTAP5-5Q701N2 237 aaPredicted RBP2.34□□□□□ -2.03
HDAC3-207ENST00000475549 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
HDAC3-207ENST00000475549 KRTAP5-11Q6L8G4 156 aa2.32□□□□□ -2.04
HDAC3-207ENST00000475549 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.32□□□□□ -2.04
HDAC3-207ENST00000475549 KRTAP20-2Q3LI61 65 aa2.31□□□□□ -2.04
HDAC3-207ENST00000475549 LCE1EQ5T753 118 aa2.31□□□□□ -2.04
HDAC3-207ENST00000475549 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
HDAC3-207ENST00000475549 SPRR5A0A1B0GTR4 108 aa2.28□□□□□ -2.04
HDAC3-207ENST00000475549 CCDC179H3BU77 68 aa2.26□□□□□ -2.05
HDAC3-207ENST00000475549 ANAPC13Q9BS18 74 aa2.25□□□□□ -2.05
HDAC3-207ENST00000475549 LINC01558Q9Y6Z2 57 aa2.25□□□□□ -2.05
HDAC3-207ENST00000475549 KRTAP12-4P60329 112 aa2.23□□□□□ -2.05
HDAC3-207ENST00000475549 PRR15LQ9BU68 103 aa2.23□□□□□ -2.05
HDAC3-207ENST00000475549 SYNE1Q8NF91 8797 aaKnown RBP2.22□□□□□ -2.05
HDAC3-207ENST00000475549 UQCR11O14957 56 aa2.19□□□□□ -2.06
HDAC3-207ENST00000475549 KRTAP25-1Q3LHN0 102 aa2.19□□□□□ -2.06
HDAC3-207ENST00000475549 ATP5EP56381 51 aaPredicted RBP2.18□□□□□ -2.06
HDAC3-207ENST00000475549 LCE3CQ5T5A8 94 aa2.17□□□□□ -2.06
HDAC3-207ENST00000475549 MIR22HGQ0VDD5 57 aa2.14□□□□□ -2.07
HDAC3-207ENST00000475549 KRTAP6-1Q3LI64 71 aa2.13□□□□□ -2.07
HDAC3-207ENST00000475549 KRTAP5-2Q701N4 177 aa2.13□□□□□ -2.07
HDAC3-207ENST00000475549 TMEM258P61165 79 aa2.11□□□□□ -2.07
HDAC3-207ENST00000475549 MT1AP04731 61 aa2.1□□□□□ -2.07
HDAC3-207ENST00000475549 KRTAP9-6A8MVA2 160 aa2.09□□□□□ -2.07
HDAC3-207ENST00000475549 KRTAP5-8O75690 187 aa2.08□□□□□ -2.08
HDAC3-207ENST00000475549 PSPHP1O15172 72 aa2.07□□□□□ -2.08
HDAC3-207ENST00000475549 K7ERS5 55 aa2.05□□□□□ -2.08
HDAC3-207ENST00000475549 KRTAP6-2Q3LI66 62 aa2.04□□□□□ -2.08
HDAC3-207ENST00000475549 KRTAP5-1Q6L8H4 278 aa2.04□□□□□ -2.08
HDAC3-207ENST00000475549 MUC5ACP98088 5654 aa2.03□□□□□ -2.08
HDAC3-207ENST00000475549 Q1T7F1 81 aa2.03□□□□□ -2.08
HDAC3-207ENST00000475549 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
HDAC3-207ENST00000475549 V9GYY9 64 aa2.02□□□□□ -2.09
HDAC3-207ENST00000475549 AHNAKQ09666 5890 aaKnown RBP2□□□□□ -2.09
HDAC3-207ENST00000475549 OBSCNQ5VST9 7968 aa1.98□□□□□ -2.09
HDAC3-207ENST00000475549 LCE3EQ5T5B0 92 aa1.97□□□□□ -2.09
HDAC3-207ENST00000475549 CDC42SE1Q9NRR8 79 aa1.97□□□□□ -2.09
HDAC3-207ENST00000475549 ROMO1P60602 79 aa1.96□□□□□ -2.1
HDAC3-207ENST00000475549 A6NED7 52 aa1.95□□□□□ -2.1
HDAC3-207ENST00000475549 RPS28P62857 69 aaKnown RBP1.94□□□□□ -2.1
HDAC3-207ENST00000475549 KRTAP4-4Q9BYR3 166 aa1.94□□□□□ -2.1
HDAC3-207ENST00000475549 PRO0628Q9UI54 55 aa1.92□□□□□ -2.1
HDAC3-207ENST00000475549 LUZP6Q538Z0 58 aa1.91□□□□□ -2.1
HDAC3-207ENST00000475549 LCE1BQ5T7P3 118 aa1.7□□□□□ -2.14
HDAC3-207ENST00000475549 LCE3DQ9BYE3 92 aa1.69□□□□□ -2.14
HDAC3-207ENST00000475549 LCE1CQ5T751 118 aa1.68□□□□□ -2.14
HDAC3-207ENST00000475549 BRK1Q8WUW1 75 aa1.55□□□□□ -2.16
HDAC3-207ENST00000475549 PMAIP1Q13794 54 aa1.48□□□□□ -2.17
HDAC3-207ENST00000475549 KRTAP21-2Q3LI59 83 aa1.42□□□□□ -2.18
HDAC3-207ENST00000475549 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
HDAC3-207ENST00000475549 KTN1-AS1Q86SY8 53 aa1.38□□□□□ -2.19
HDAC3-207ENST00000475549 MUC19Q7Z5P9 8384 aa1.25□□□□□ -2.21
HDAC3-207ENST00000475549 INE1O15225 51 aa1.04□□□□□ -2.24
HDAC3-207ENST00000475549 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
HDAC3-207ENST00000475549 PRM1P04553 51 aa1.01□□□□□ -2.25
HDAC3-207ENST00000475549 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 71 ms