RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, humanhuman

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNL1-215ENST00000474539 LCE3CQ5T5A8 94 aa1.72□□□□□ -2.13
CCNL1-215ENST00000474539 KRTAP19-5Q3LI72 72 aa1.71□□□□□ -2.14
CCNL1-215ENST00000474539 KRTAP19-6Q3LI70 58 aa1.7□□□□□ -2.14
CCNL1-215ENST00000474539 KRTAP9-3Q9BYQ3 159 aa1.7□□□□□ -2.14
CCNL1-215ENST00000474539 SRRM2Q9UQ35 2752 aaKnown RBP1.68□□□□□ -2.14
CCNL1-215ENST00000474539 MT1BP07438 61 aa1.67□□□□□ -2.14
CCNL1-215ENST00000474539 FAT4Q6V0I7 4981 aa1.66□□□□□ -2.14
CCNL1-215ENST00000474539 LRP2P98164 4655 aa1.66□□□□□ -2.14
CCNL1-215ENST00000474539 LCE3BQ5TA77 95 aa1.65□□□□□ -2.14
CCNL1-215ENST00000474539 FLGP20930 4061 aaPredicted RBP1.65□□□□□ -2.14
CCNL1-215ENST00000474539 MT1XP80297 61 aa1.65□□□□□ -2.15
CCNL1-215ENST00000474539 MUC17Q685J3 4493 aa1.64□□□□□ -2.15
CCNL1-215ENST00000474539 LCE1AQ5T7P2 110 aa1.63□□□□□ -2.15
CCNL1-215ENST00000474539 KRTAP19-3Q7Z4W3 81 aa1.63□□□□□ -2.15
CCNL1-215ENST00000474539 KRTAP6-3Q3LI67 103 aa1.63□□□□□ -2.15
CCNL1-215ENST00000474539 KRTAP20-1Q3LI63 56 aa1.61□□□□□ -2.15
CCNL1-215ENST00000474539 MT1LQ93083 61 aa1.6□□□□□ -2.15
CCNL1-215ENST00000474539 KRTAP2-3P0C7H8 128 aa1.59□□□□□ -2.16
CCNL1-215ENST00000474539 KRTAP2-4Q9BYR9 128 aa1.59□□□□□ -2.16
CCNL1-215ENST00000474539 MT3P25713 68 aa1.56□□□□□ -2.16
CCNL1-215ENST00000474539 MT1EP04732 61 aa1.56□□□□□ -2.16
CCNL1-215ENST00000474539 KRTAP9-7A8MTY7 169 aa1.56□□□□□ -2.16
CCNL1-215ENST00000474539 KRTAP19-2Q3LHN2 52 aa1.56□□□□□ -2.16
CCNL1-215ENST00000474539 LCE4AQ5TA78 99 aa1.55□□□□□ -2.16
CCNL1-215ENST00000474539 LCE5AQ5TCM9 118 aa1.54□□□□□ -2.16
CCNL1-215ENST00000474539 MT1MQ8N339 61 aa1.53□□□□□ -2.16
CCNL1-215ENST00000474539 KRTAP2-2Q9BYT5 123 aa1.52□□□□□ -2.17
CCNL1-215ENST00000474539 KRTAP2-1Q9BYU5 128 aa1.52□□□□□ -2.17
CCNL1-215ENST00000474539 LCE3DQ9BYE3 92 aa1.5□□□□□ -2.17
CCNL1-215ENST00000474539 LCE3EQ5T5B0 92 aa1.5□□□□□ -2.17
CCNL1-215ENST00000474539 USH2AO75445 5202 aa1.48□□□□□ -2.17
CCNL1-215ENST00000474539 SPRR5A0A1B0GTR4 108 aa1.48□□□□□ -2.17
CCNL1-215ENST00000474539 MT1AP04731 61 aa1.46□□□□□ -2.18
CCNL1-215ENST00000474539 KRTAP5-9P26371 169 aa1.46□□□□□ -2.18
CCNL1-215ENST00000474539 KRTAP5-2Q701N4 177 aa1.44□□□□□ -2.18
CCNL1-215ENST00000474539 MT4P47944 62 aa1.42□□□□□ -2.18
CCNL1-215ENST00000474539 SSPOA2VEC9 5147 aa1.39□□□□□ -2.19
CCNL1-215ENST00000474539 KRTAP5-4Q6L8H1 288 aa1.38□□□□□ -2.19
CCNL1-215ENST00000474539 FSIP2Q5CZC0 6907 aa1.37□□□□□ -2.19
CCNL1-215ENST00000474539 KRTAP19-7Q3SYF9 63 aa1.36□□□□□ -2.19
CCNL1-215ENST00000474539 OBSCNQ5VST9 7968 aa1.32□□□□□ -2.2
CCNL1-215ENST00000474539 KMT2DO14686 5537 aa1.32□□□□□ -2.2
CCNL1-215ENST00000474539 KRTAP5-11Q6L8G4 156 aa1.31□□□□□ -2.2
CCNL1-215ENST00000474539 LCE1FQ5T754 118 aa1.31□□□□□ -2.2
CCNL1-215ENST00000474539 LCE1BQ5T7P3 118 aa1.3□□□□□ -2.2
CCNL1-215ENST00000474539 MUC12Q9UKN1 5478 aa1.28□□□□□ -2.2
CCNL1-215ENST00000474539 SYNE2Q8WXH0 6885 aaKnown RBP1.28□□□□□ -2.2
CCNL1-215ENST00000474539 FCGBPQ9Y6R7 5405 aaPredicted RBP1.26□□□□□ -2.21
CCNL1-215ENST00000474539 MACF1Q9UPN3 7388 aaKnown RBP1.26□□□□□ -2.21
CCNL1-215ENST00000474539 NEBP20929 6669 aa1.24□□□□□ -2.21
CCNL1-215ENST00000474539 KRTAP4-4Q9BYR3 166 aa1.24□□□□□ -2.21
CCNL1-215ENST00000474539 MDN1Q9NU22 5596 aa1.23□□□□□ -2.21
CCNL1-215ENST00000474539 KRTAP6-2Q3LI66 62 aa1.21□□□□□ -2.21
CCNL1-215ENST00000474539 HMCN1Q96RW7 5635 aa1.21□□□□□ -2.22
CCNL1-215ENST00000474539 KRTAP6-1Q3LI64 71 aa1.2□□□□□ -2.22
CCNL1-215ENST00000474539 KRTAP4-3Q9BYR4 195 aa1.19□□□□□ -2.22
CCNL1-215ENST00000474539 PRM1P04553 51 aa1.19□□□□□ -2.22
CCNL1-215ENST00000474539 LCE1CQ5T751 118 aa1.17□□□□□ -2.22
CCNL1-215ENST00000474539 LCE1EQ5T753 118 aa1.17□□□□□ -2.22
CCNL1-215ENST00000474539 KRTAP20-2Q3LI61 65 aa1.15□□□□□ -2.23
CCNL1-215ENST00000474539 GPR98Q8WXG9 6306 aa1.11□□□□□ -2.23
CCNL1-215ENST00000474539 KRTAP5-1Q6L8H4 278 aa1.11□□□□□ -2.23
CCNL1-215ENST00000474539 MUC5BQ9HC84 5762 aaPredicted RBP1.09□□□□□ -2.23
CCNL1-215ENST00000474539 KRTAP5-8O75690 187 aa1.05□□□□□ -2.24
CCNL1-215ENST00000474539 SYNE1Q8NF91 8797 aaKnown RBP1.04□□□□□ -2.24
CCNL1-215ENST00000474539 KRTAP9-6A8MVA2 160 aa1.03□□□□□ -2.25
CCNL1-215ENST00000474539 AHNAKQ09666 5890 aaKnown RBP1.01□□□□□ -2.25
CCNL1-215ENST00000474539 DSTQ03001 7570 aaKnown RBP1.01□□□□□ -2.25
CCNL1-215ENST00000474539 KRTAP5-5Q701N2 237 aaPredicted RBP1□□□□□ -2.25
CCNL1-215ENST00000474539 AHNAK2Q8IVF2 5795 aa0.98□□□□□ -2.25
CCNL1-215ENST00000474539 KRTAP5-7Q6L8G8 165 aa0.96□□□□□ -2.26
CCNL1-215ENST00000474539 MUC5ACP98088 5654 aa0.95□□□□□ -2.26
CCNL1-215ENST00000474539 KRTAP5-10Q6L8G5 202 aa0.81□□□□□ -2.28
CCNL1-215ENST00000474539 PHGR1C9JFL3 82 aa0.8□□□□□ -2.28
CCNL1-215ENST00000474539 MUC19Q7Z5P9 8384 aa0.76□□□□□ -2.29
CCNL1-215ENST00000474539 KRTAP21-1Q3LI58 79 aa0.7□□□□□ -2.3
CCNL1-215ENST00000474539 KRTAP21-2Q3LI59 83 aa0.69□□□□□ -2.3
CCNL1-215ENST00000474539 MUC16Q8WXI7 14507 aa0.49□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 10.1 ms