RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 MIR22HGQ0VDD5 57 aa5.27□□□□□ -1.57
VAMP4-203ENST00000474047 MT1EP04732 61 aa5.26□□□□□ -1.57
VAMP4-203ENST00000474047 KRTAP5-3Q6L8H2 238 aa5.26□□□□□ -1.57
VAMP4-203ENST00000474047 KRTAP19-5Q3LI72 72 aa5.25□□□□□ -1.57
VAMP4-203ENST00000474047 PSPHP1O15172 72 aa5.23□□□□□ -1.57
VAMP4-203ENST00000474047 KRTAP19-3Q7Z4W3 81 aa5.21□□□□□ -1.58
VAMP4-203ENST00000474047 K7ERS5 55 aa5.2□□□□□ -1.58
VAMP4-203ENST00000474047 Q1T7F1 81 aa5.2□□□□□ -1.58
VAMP4-203ENST00000474047 LCE3AQ5TA76 89 aa5.19□□□□□ -1.58
VAMP4-203ENST00000474047 LCE5AQ5TCM9 118 aa5.19□□□□□ -1.58
VAMP4-203ENST00000474047 MT1GP13640 62 aa5.12□□□□□ -1.59
VAMP4-203ENST00000474047 PP632Q6XCG6 107 aa5.12□□□□□ -1.59
VAMP4-203ENST00000474047 PCP4P48539 62 aa5.09□□□□□ -1.59
VAMP4-203ENST00000474047 A6NED7 52 aa5.09□□□□□ -1.6
VAMP4-203ENST00000474047 MT1LQ93083 61 aa5.06□□□□□ -1.6
VAMP4-203ENST00000474047 KRTAP25-1Q3LHN0 102 aa5.05□□□□□ -1.6
VAMP4-203ENST00000474047 RPS28P62857 69 aaKnown RBP5.03□□□□□ -1.6
VAMP4-203ENST00000474047 MT1MQ8N339 61 aa5.01□□□□□ -1.61
VAMP4-203ENST00000474047 KRTAP12-3P60328 96 aa5□□□□□ -1.61
VAMP4-203ENST00000474047 DSTQ03001 7570 aaKnown RBP4.99□□□□□ -1.61
VAMP4-203ENST00000474047 KRTAP4-11Q9BYQ6 195 aa4.97□□□□□ -1.61
VAMP4-203ENST00000474047 KRTAP5-10Q6L8G5 202 aa4.92□□□□□ -1.62
VAMP4-203ENST00000474047 CDC42SE1Q9NRR8 79 aa4.9□□□□□ -1.62
VAMP4-203ENST00000474047 AHNAK2Q8IVF2 5795 aa4.9□□□□□ -1.63
VAMP4-203ENST00000474047 KRTAP4-3Q9BYR4 195 aa4.89□□□□□ -1.63
VAMP4-203ENST00000474047 KRTAP5-7Q6L8G8 165 aa4.87□□□□□ -1.63
VAMP4-203ENST00000474047 HMCN1Q96RW7 5635 aa4.85□□□□□ -1.63
VAMP4-203ENST00000474047 KRTAP23-1A1A580 65 aa4.84□□□□□ -1.63
VAMP4-203ENST00000474047 ROMO1P60602 79 aa4.81□□□□□ -1.64
VAMP4-203ENST00000474047 LCE4AQ5TA78 99 aa4.79□□□□□ -1.64
VAMP4-203ENST00000474047 SPRR5A0A1B0GTR4 108 aa4.75□□□□□ -1.65
VAMP4-203ENST00000474047 MT4P47944 62 aa4.75□□□□□ -1.65
VAMP4-203ENST00000474047 KRTAP19-4Q3LI73 84 aa4.73□□□□□ -1.65
VAMP4-203ENST00000474047 KRTAP15-1Q3LI76 137 aa4.72□□□□□ -1.65
VAMP4-203ENST00000474047 KRTAP5-4Q6L8H1 288 aa4.67□□□□□ -1.66
VAMP4-203ENST00000474047 LCE3CQ5T5A8 94 aa4.61□□□□□ -1.67
VAMP4-203ENST00000474047 KRTAP5-5Q701N2 237 aaPredicted RBP4.54□□□□□ -1.68
VAMP4-203ENST00000474047 KRTAP12-4P60329 112 aa4.49□□□□□ -1.69
VAMP4-203ENST00000474047 BRK1Q8WUW1 75 aa4.49□□□□□ -1.69
VAMP4-203ENST00000474047 KRTAP20-2Q3LI61 65 aa4.43□□□□□ -1.7
VAMP4-203ENST00000474047 AHNAKQ09666 5890 aaKnown RBP4.38□□□□□ -1.71
VAMP4-203ENST00000474047 H3BS24 57 aa4.38□□□□□ -1.71
VAMP4-203ENST00000474047 MT1AP04731 61 aa4.31□□□□□ -1.72
VAMP4-203ENST00000474047 KRTAP9-6A8MVA2 160 aa4.29□□□□□ -1.72
VAMP4-203ENST00000474047 SYNE1Q8NF91 8797 aaKnown RBP4.29□□□□□ -1.72
VAMP4-203ENST00000474047 KRTAP6-1Q3LI64 71 aa4.27□□□□□ -1.73
VAMP4-203ENST00000474047 PMAIP1Q13794 54 aa4.24□□□□□ -1.73
VAMP4-203ENST00000474047 MUC5ACP98088 5654 aa4.22□□□□□ -1.73
VAMP4-203ENST00000474047 MUC5BQ9HC84 5762 aaPredicted RBP4.18□□□□□ -1.74
VAMP4-203ENST00000474047 KRTAP5-2Q701N4 177 aa4.11□□□□□ -1.75
VAMP4-203ENST00000474047 KRTAP6-2Q3LI66 62 aa4.07□□□□□ -1.76
VAMP4-203ENST00000474047 PRAC1Q96KF2 57 aa4.02□□□□□ -1.77
VAMP4-203ENST00000474047 MT3P25713 68 aa3.97□□□□□ -1.77
VAMP4-203ENST00000474047 PRO0628Q9UI54 55 aa3.96□□□□□ -1.78
VAMP4-203ENST00000474047 KRTAP5-8O75690 187 aa3.93□□□□□ -1.78
VAMP4-203ENST00000474047 SVIPQ8NHG7 77 aa3.93□□□□□ -1.78
VAMP4-203ENST00000474047 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.78□□□□□ -1.8
VAMP4-203ENST00000474047 OBSCNQ5VST9 7968 aa3.78□□□□□ -1.8
VAMP4-203ENST00000474047 KTN1-AS1Q86SY8 53 aa3.78□□□□□ -1.8
VAMP4-203ENST00000474047 KRTAP5-1Q6L8H4 278 aa3.66□□□□□ -1.82
VAMP4-203ENST00000474047 LCE1EQ5T753 118 aa3.58□□□□□ -1.84
VAMP4-203ENST00000474047 LUZP6Q538Z0 58 aa3.46□□□□□ -1.86
VAMP4-203ENST00000474047 LCE1BQ5T7P3 118 aa3.42□□□□□ -1.86
VAMP4-203ENST00000474047 KRTAP5-11Q6L8G4 156 aa3.38□□□□□ -1.87
VAMP4-203ENST00000474047 LCE3DQ9BYE3 92 aa3.37□□□□□ -1.87
VAMP4-203ENST00000474047 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
VAMP4-203ENST00000474047 A0A0A0MQY5 61 aa3.27□□□□□ -1.89
VAMP4-203ENST00000474047 LCE3EQ5T5B0 92 aa3.19□□□□□ -1.9
VAMP4-203ENST00000474047 KRTAP4-4Q9BYR3 166 aa3.13□□□□□ -1.91
VAMP4-203ENST00000474047 PHGR1C9JFL3 82 aa2.9□□□□□ -1.94
VAMP4-203ENST00000474047 LCE1FQ5T754 118 aa2.9□□□□□ -1.95
VAMP4-203ENST00000474047 NDUFAF8A1L188 74 aa2.82□□□□□ -1.96
VAMP4-203ENST00000474047 KRTAP21-2Q3LI59 83 aa2.79□□□□□ -1.96
VAMP4-203ENST00000474047 PRM1P04553 51 aa2.46□□□□□ -2.02
VAMP4-203ENST00000474047 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
VAMP4-203ENST00000474047 INE1O15225 51 aa2.28□□□□□ -2.05
VAMP4-203ENST00000474047 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
VAMP4-203ENST00000474047 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 166.7 ms