RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 LCE5AQ5TCM9 118 aa7□□□□□ -1.29
PTCD3-210ENST00000473829 KRTAP19-5Q3LI72 72 aa6.98□□□□□ -1.29
PTCD3-210ENST00000473829 KRTAP19-3Q7Z4W3 81 aa6.94□□□□□ -1.3
PTCD3-210ENST00000473829 KRTAP4-11Q9BYQ6 195 aa6.94□□□□□ -1.3
PTCD3-210ENST00000473829 KRTAP4-2Q9BYR5 136 aa6.94□□□□□ -1.3
PTCD3-210ENST00000473829 TNP1P09430 55 aa6.93□□□□□ -1.3
PTCD3-210ENST00000473829 LCE3AQ5TA76 89 aa6.91□□□□□ -1.3
PTCD3-210ENST00000473829 MIR22HGQ0VDD5 57 aa6.88□□□□□ -1.31
PTCD3-210ENST00000473829 PSPHP1O15172 72 aa6.87□□□□□ -1.31
PTCD3-210ENST00000473829 Q1T7F1 81 aa6.85□□□□□ -1.31
PTCD3-210ENST00000473829 V9GYY9 64 aa6.84□□□□□ -1.31
PTCD3-210ENST00000473829 DSTQ03001 7570 aaKnown RBP6.81□□□□□ -1.32
PTCD3-210ENST00000473829 MT1GP13640 62 aa6.77□□□□□ -1.33
PTCD3-210ENST00000473829 MT1LQ93083 61 aa6.76□□□□□ -1.33
PTCD3-210ENST00000473829 MT1MQ8N339 61 aa6.7□□□□□ -1.34
PTCD3-210ENST00000473829 PCP4P48539 62 aa6.69□□□□□ -1.34
PTCD3-210ENST00000473829 PP632Q6XCG6 107 aa6.68□□□□□ -1.34
PTCD3-210ENST00000473829 K7ERS5 55 aa6.65□□□□□ -1.34
PTCD3-210ENST00000473829 KRTAP12-3P60328 96 aa6.61□□□□□ -1.35
PTCD3-210ENST00000473829 KRTAP25-1Q3LHN0 102 aa6.61□□□□□ -1.35
PTCD3-210ENST00000473829 A6NED7 52 aa6.6□□□□□ -1.35
PTCD3-210ENST00000473829 RPS28P62857 69 aaKnown RBP6.6□□□□□ -1.35
PTCD3-210ENST00000473829 KRTAP4-3Q9BYR4 195 aa6.58□□□□□ -1.36
PTCD3-210ENST00000473829 KRTAP23-1A1A580 65 aa6.54□□□□□ -1.36
PTCD3-210ENST00000473829 CDC42SE1Q9NRR8 79 aa6.37□□□□□ -1.39
PTCD3-210ENST00000473829 ROMO1P60602 79 aa6.29□□□□□ -1.4
PTCD3-210ENST00000473829 KRTAP5-4Q6L8H1 288 aa6.29□□□□□ -1.4
PTCD3-210ENST00000473829 MT4P47944 62 aa6.28□□□□□ -1.4
PTCD3-210ENST00000473829 HMCN1Q96RW7 5635 aa6.27□□□□□ -1.41
PTCD3-210ENST00000473829 KRTAP15-1Q3LI76 137 aa6.24□□□□□ -1.41
PTCD3-210ENST00000473829 GPR98Q8WXG9 6306 aa6.17□□□□□ -1.42
PTCD3-210ENST00000473829 KRTAP5-5Q701N2 237 aaPredicted RBP6.14□□□□□ -1.43
PTCD3-210ENST00000473829 LCE3CQ5T5A8 94 aa6.11□□□□□ -1.43
PTCD3-210ENST00000473829 KRTAP5-3Q6L8H2 238 aa6.01□□□□□ -1.45
PTCD3-210ENST00000473829 AHNAK2Q8IVF2 5795 aa6.01□□□□□ -1.45
PTCD3-210ENST00000473829 KRTAP20-2Q3LI61 65 aa5.93□□□□□ -1.46
PTCD3-210ENST00000473829 SYNE1Q8NF91 8797 aaKnown RBP5.92□□□□□ -1.46
PTCD3-210ENST00000473829 SPRR5A0A1B0GTR4 108 aa5.89□□□□□ -1.47
PTCD3-210ENST00000473829 KRTAP12-4P60329 112 aa5.86□□□□□ -1.47
PTCD3-210ENST00000473829 BRK1Q8WUW1 75 aa5.84□□□□□ -1.47
PTCD3-210ENST00000473829 KRTAP9-6A8MVA2 160 aa5.83□□□□□ -1.48
PTCD3-210ENST00000473829 KRTAP5-10Q6L8G5 202 aa5.8□□□□□ -1.48
PTCD3-210ENST00000473829 MT1AP04731 61 aa5.75□□□□□ -1.49
PTCD3-210ENST00000473829 KRTAP6-1Q3LI64 71 aa5.73□□□□□ -1.49
PTCD3-210ENST00000473829 KRTAP5-2Q701N4 177 aa5.56□□□□□ -1.52
PTCD3-210ENST00000473829 KRTAP5-7Q6L8G8 165 aa5.54□□□□□ -1.52
PTCD3-210ENST00000473829 PMAIP1Q13794 54 aa5.46□□□□□ -1.54
PTCD3-210ENST00000473829 KRTAP6-2Q3LI66 62 aa5.43□□□□□ -1.54
PTCD3-210ENST00000473829 PRAC1Q96KF2 57 aa5.32□□□□□ -1.56
PTCD3-210ENST00000473829 OBSCNQ5VST9 7968 aa5.22□□□□□ -1.57
PTCD3-210ENST00000473829 MT3P25713 68 aa5.22□□□□□ -1.57
PTCD3-210ENST00000473829 KRTAP5-8O75690 187 aa5.2□□□□□ -1.58
PTCD3-210ENST00000473829 PRO0628Q9UI54 55 aa5.16□□□□□ -1.58
PTCD3-210ENST00000473829 KRTAP5-1Q6L8H4 278 aa4.95□□□□□ -1.62
PTCD3-210ENST00000473829 KTN1-AS1Q86SY8 53 aa4.93□□□□□ -1.62
PTCD3-210ENST00000473829 MUC5BQ9HC84 5762 aaPredicted RBP4.89□□□□□ -1.63
PTCD3-210ENST00000473829 MUC5ACP98088 5654 aa4.88□□□□□ -1.63
PTCD3-210ENST00000473829 AHNAKQ09666 5890 aaKnown RBP4.86□□□□□ -1.63
PTCD3-210ENST00000473829 SVIPQ8NHG7 77 aa4.85□□□□□ -1.63
PTCD3-210ENST00000473829 A0A0A0MQY5 61 aa4.8□□□□□ -1.64
PTCD3-210ENST00000473829 LCE1EQ5T753 118 aa4.75□□□□□ -1.65
PTCD3-210ENST00000473829 KRTAP5-11Q6L8G4 156 aa4.65□□□□□ -1.67
PTCD3-210ENST00000473829 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.58□□□□□ -1.68
PTCD3-210ENST00000473829 LCE1BQ5T7P3 118 aa4.49□□□□□ -1.69
PTCD3-210ENST00000473829 LCE1CQ5T751 118 aa4.42□□□□□ -1.7
PTCD3-210ENST00000473829 LCE3DQ9BYE3 92 aa4.42□□□□□ -1.7
PTCD3-210ENST00000473829 LUZP6Q538Z0 58 aa4.35□□□□□ -1.71
PTCD3-210ENST00000473829 LCE1FQ5T754 118 aa4.26□□□□□ -1.73
PTCD3-210ENST00000473829 LCE3EQ5T5B0 92 aa4.17□□□□□ -1.74
PTCD3-210ENST00000473829 NDUFAF8A1L188 74 aa4.09□□□□□ -1.75
PTCD3-210ENST00000473829 KRTAP4-4Q9BYR3 166 aa3.8□□□□□ -1.8
PTCD3-210ENST00000473829 KRTAP21-2Q3LI59 83 aa3.77□□□□□ -1.81
PTCD3-210ENST00000473829 PHGR1C9JFL3 82 aa3.45□□□□□ -1.86
PTCD3-210ENST00000473829 PRM1P04553 51 aa3.25□□□□□ -1.89
PTCD3-210ENST00000473829 MUC19Q7Z5P9 8384 aa3.19□□□□□ -1.9
PTCD3-210ENST00000473829 INE1O15225 51 aa2.89□□□□□ -1.95
PTCD3-210ENST00000473829 KRTAP21-1Q3LI58 79 aa2.52□□□□□ -2.01
PTCD3-210ENST00000473829 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 66.1 ms