RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 MUC12Q9UKN1 5478 aa6.89□□□□□ -1.31
SMARCD3-209ENST00000472988 MT1LQ93083 61 aa6.85□□□□□ -1.31
SMARCD3-209ENST00000472988 KRTAP19-3Q7Z4W3 81 aa6.78□□□□□ -1.32
SMARCD3-209ENST00000472988 LCE1AQ5T7P2 110 aa6.77□□□□□ -1.33
SMARCD3-209ENST00000472988 SPRR2EP22531 72 aa6.74□□□□□ -1.33
SMARCD3-209ENST00000472988 SPRR2BP35325 72 aa6.74□□□□□ -1.33
SMARCD3-209ENST00000472988 SPRR2AP35326 72 aa6.74□□□□□ -1.33
SMARCD3-209ENST00000472988 LCE5AQ5TCM9 118 aa6.7□□□□□ -1.34
SMARCD3-209ENST00000472988 MT1GP13640 62 aa6.69□□□□□ -1.34
SMARCD3-209ENST00000472988 MDN1Q9NU22 5596 aa6.69□□□□□ -1.34
SMARCD3-209ENST00000472988 MT1MQ8N339 61 aa6.63□□□□□ -1.35
SMARCD3-209ENST00000472988 LCE3CQ5T5A8 94 aa6.62□□□□□ -1.35
SMARCD3-209ENST00000472988 KRTAP4-7Q9BYR0 210 aa6.62□□□□□ -1.35
SMARCD3-209ENST00000472988 KRTAP19-4Q3LI73 84 aa6.61□□□□□ -1.35
SMARCD3-209ENST00000472988 NEBP20929 6669 aa6.61□□□□□ -1.35
SMARCD3-209ENST00000472988 KRTAP4-3Q9BYR4 195 aa6.52□□□□□ -1.37
SMARCD3-209ENST00000472988 SPRR2DP22532 72 aa6.49□□□□□ -1.37
SMARCD3-209ENST00000472988 SPRR5A0A1B0GTR4 108 aa6.41□□□□□ -1.38
SMARCD3-209ENST00000472988 DSTQ03001 7570 aaKnown RBP6.37□□□□□ -1.39
SMARCD3-209ENST00000472988 KRTAP9-6A8MVA2 160 aa6.3□□□□□ -1.4
SMARCD3-209ENST00000472988 LCE3BQ5TA77 95 aa6.25□□□□□ -1.41
SMARCD3-209ENST00000472988 LOC100996750A0A140TA64 210 aa6.23□□□□□ -1.41
SMARCD3-209ENST00000472988 NDUFAF8A1L188 74 aa6.21□□□□□ -1.42
SMARCD3-209ENST00000472988 KRTAP2-3P0C7H8 128 aa6.14□□□□□ -1.43
SMARCD3-209ENST00000472988 KRTAP2-4Q9BYR9 128 aa6.14□□□□□ -1.43
SMARCD3-209ENST00000472988 KRTAP20-1Q3LI63 56 aa6.12□□□□□ -1.43
SMARCD3-209ENST00000472988 KRTAP5-5Q701N2 237 aaPredicted RBP6.01□□□□□ -1.45
SMARCD3-209ENST00000472988 LUZP6Q538Z0 58 aa6.01□□□□□ -1.45
SMARCD3-209ENST00000472988 KRTAP2-2Q9BYT5 123 aa6.01□□□□□ -1.45
SMARCD3-209ENST00000472988 KRTAP2-1Q9BYU5 128 aa6.01□□□□□ -1.45
SMARCD3-209ENST00000472988 A0A0A0MQY5 61 aa5.91□□□□□ -1.46
SMARCD3-209ENST00000472988 KRTAP5-4Q6L8H1 288 aa5.84□□□□□ -1.47
SMARCD3-209ENST00000472988 MT1AP04731 61 aa5.82□□□□□ -1.48
SMARCD3-209ENST00000472988 KRTAP6-1Q3LI64 71 aa5.78□□□□□ -1.48
SMARCD3-209ENST00000472988 LCE4AQ5TA78 99 aa5.75□□□□□ -1.49
SMARCD3-209ENST00000472988 SYNE1Q8NF91 8797 aaKnown RBP5.67□□□□□ -1.5
SMARCD3-209ENST00000472988 MT4P47944 62 aa5.65□□□□□ -1.51
SMARCD3-209ENST00000472988 KRTAP4-9Q9BYQ8 210 aa5.65□□□□□ -1.51
SMARCD3-209ENST00000472988 LCE1DQ5T752 114 aa5.59□□□□□ -1.51
SMARCD3-209ENST00000472988 KRTAP4-6Q9BYQ5 205 aa5.59□□□□□ -1.52
SMARCD3-209ENST00000472988 KRTAP12-4P60329 112 aa5.58□□□□□ -1.52
SMARCD3-209ENST00000472988 KRTAP9-4Q9BYQ2 154 aa5.53□□□□□ -1.52
SMARCD3-209ENST00000472988 KRTAP20-2Q3LI61 65 aa5.47□□□□□ -1.53
SMARCD3-209ENST00000472988 HMCN1Q96RW7 5635 aa5.45□□□□□ -1.54
SMARCD3-209ENST00000472988 KRTAP6-2Q3LI66 62 aa5.36□□□□□ -1.55
SMARCD3-209ENST00000472988 INE1O15225 51 aa5.32□□□□□ -1.56
SMARCD3-209ENST00000472988 KRTAP5-3Q6L8H2 238 aa5.28□□□□□ -1.56
SMARCD3-209ENST00000472988 KRTAP5-2Q701N4 177 aa5.27□□□□□ -1.57
SMARCD3-209ENST00000472988 MT3P25713 68 aa5.25□□□□□ -1.57
SMARCD3-209ENST00000472988 AHNAK2Q8IVF2 5795 aa4.96□□□□□ -1.62
SMARCD3-209ENST00000472988 OBSCNQ5VST9 7968 aa4.92□□□□□ -1.62
SMARCD3-209ENST00000472988 LCE3DQ9BYE3 92 aa4.92□□□□□ -1.62
SMARCD3-209ENST00000472988 GPR98Q8WXG9 6306 aa4.84□□□□□ -1.63
SMARCD3-209ENST00000472988 KRTAP4-12Q9BQ66 201 aa4.8□□□□□ -1.64
SMARCD3-209ENST00000472988 KRTAP9-9Q9BYP9 154 aa4.8□□□□□ -1.64
SMARCD3-209ENST00000472988 KRTAP4-11Q9BYQ6 195 aa4.78□□□□□ -1.64
SMARCD3-209ENST00000472988 KRTAP5-10Q6L8G5 202 aa4.77□□□□□ -1.65
SMARCD3-209ENST00000472988 LCE3EQ5T5B0 92 aa4.76□□□□□ -1.65
SMARCD3-209ENST00000472988 KRTAP5-8O75690 187 aa4.62□□□□□ -1.67
SMARCD3-209ENST00000472988 LCE1EQ5T753 118 aa4.62□□□□□ -1.67
SMARCD3-209ENST00000472988 KRTAP5-1Q6L8H4 278 aa4.58□□□□□ -1.68
SMARCD3-209ENST00000472988 KRTAP5-7Q6L8G8 165 aa4.48□□□□□ -1.69
SMARCD3-209ENST00000472988 KRTAP4-2Q9BYR5 136 aa4.35□□□□□ -1.71
SMARCD3-209ENST00000472988 LCE1BQ5T7P3 118 aa4.35□□□□□ -1.71
SMARCD3-209ENST00000472988 MUC5ACP98088 5654 aa4.33□□□□□ -1.72
SMARCD3-209ENST00000472988 LCE1CQ5T751 118 aa4.31□□□□□ -1.72
SMARCD3-209ENST00000472988 PRM1P04553 51 aa4.07□□□□□ -1.76
SMARCD3-209ENST00000472988 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.03□□□□□ -1.76
SMARCD3-209ENST00000472988 MUC5BQ9HC84 5762 aaPredicted RBP4□□□□□ -1.77
SMARCD3-209ENST00000472988 AHNAKQ09666 5890 aaKnown RBP3.89□□□□□ -1.79
SMARCD3-209ENST00000472988 KRTAP5-11Q6L8G4 156 aa3.84□□□□□ -1.8
SMARCD3-209ENST00000472988 KRTAP21-2Q3LI59 83 aa3.79□□□□□ -1.8
SMARCD3-209ENST00000472988 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
SMARCD3-209ENST00000472988 KRTAP4-4Q9BYR3 166 aa3.39□□□□□ -1.87
SMARCD3-209ENST00000472988 PHGR1C9JFL3 82 aa3.3□□□□□ -1.88
SMARCD3-209ENST00000472988 MUC19Q7Z5P9 8384 aa2.94□□□□□ -1.94
SMARCD3-209ENST00000472988 KRTAP21-1Q3LI58 79 aa2.44□□□□□ -2.02
SMARCD3-209ENST00000472988 MUC16Q8WXI7 14507 aa2.09□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 60.7 ms