RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 GPR98Q8WXG9 6306 aa3.35□□□□□ -1.87
USF1-204ENST00000472217 ATP5EP56381 51 aaPredicted RBP3.34□□□□□ -1.87
USF1-204ENST00000472217 KRTAP19-3Q7Z4W3 81 aa3.34□□□□□ -1.87
USF1-204ENST00000472217 RPS28P62857 69 aaKnown RBP3.33□□□□□ -1.88
USF1-204ENST00000472217 CCDC179H3BU77 68 aa3.32□□□□□ -1.88
USF1-204ENST00000472217 A0A0A0MQY5 61 aa3.31□□□□□ -1.88
USF1-204ENST00000472217 KRTAP19-5Q3LI72 72 aa3.3□□□□□ -1.88
USF1-204ENST00000472217 A0A1B0GU69 56 aa3.29□□□□□ -1.88
USF1-204ENST00000472217 SMIM26A0A096LP01 95 aa3.27□□□□□ -1.89
USF1-204ENST00000472217 A8MU10 97 aa3.27□□□□□ -1.89
USF1-204ENST00000472217 TMEM258P61165 79 aa3.27□□□□□ -1.89
USF1-204ENST00000472217 DSTQ03001 7570 aaKnown RBP3.25□□□□□ -1.89
USF1-204ENST00000472217 MT1GP13640 62 aa3.25□□□□□ -1.89
USF1-204ENST00000472217 PP632Q6XCG6 107 aa3.23□□□□□ -1.89
USF1-204ENST00000472217 PMAIP1Q13794 54 aa3.22□□□□□ -1.89
USF1-204ENST00000472217 MT1LQ93083 61 aa3.22□□□□□ -1.89
USF1-204ENST00000472217 LCE3AQ5TA76 89 aa3.21□□□□□ -1.9
USF1-204ENST00000472217 MT1MQ8N339 61 aa3.21□□□□□ -1.9
USF1-204ENST00000472217 PRR15LQ9BU68 103 aa3.21□□□□□ -1.9
USF1-204ENST00000472217 C10orf95Q9H7T3 257 aa3.2□□□□□ -1.9
USF1-204ENST00000472217 TNP1P09430 55 aa3.19□□□□□ -1.9
USF1-204ENST00000472217 LINC01558Q9Y6Z2 57 aa3.17□□□□□ -1.9
USF1-204ENST00000472217 KRTAP4-3Q9BYR4 195 aa3.15□□□□□ -1.91
USF1-204ENST00000472217 MT4P47944 62 aa3.12□□□□□ -1.91
USF1-204ENST00000472217 MT3P25713 68 aa3.11□□□□□ -1.91
USF1-204ENST00000472217 UQCR11O14957 56 aa3.1□□□□□ -1.91
USF1-204ENST00000472217 KRTAP5-4Q6L8H1 288 aa3.09□□□□□ -1.91
USF1-204ENST00000472217 KRTAP12-3P60328 96 aa3.07□□□□□ -1.92
USF1-204ENST00000472217 HMCN1Q96RW7 5635 aa3.05□□□□□ -1.92
USF1-204ENST00000472217 Q1T7F1 81 aa3.05□□□□□ -1.92
USF1-204ENST00000472217 KTN1-AS1Q86SY8 53 aa3.05□□□□□ -1.92
USF1-204ENST00000472217 BRK1Q8WUW1 75 aa3.05□□□□□ -1.92
USF1-204ENST00000472217 MIR22HGQ0VDD5 57 aa3.01□□□□□ -1.93
USF1-204ENST00000472217 PSPHP1O15172 72 aa2.99□□□□□ -1.93
USF1-204ENST00000472217 KRTAP25-1Q3LHN0 102 aa2.99□□□□□ -1.93
USF1-204ENST00000472217 K7ERS5 55 aa2.98□□□□□ -1.93
USF1-204ENST00000472217 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
USF1-204ENST00000472217 KRTAP5-5Q701N2 237 aaPredicted RBP2.95□□□□□ -1.94
USF1-204ENST00000472217 AHNAK2Q8IVF2 5795 aa2.93□□□□□ -1.94
USF1-204ENST00000472217 A6NED7 52 aa2.92□□□□□ -1.94
USF1-204ENST00000472217 KRTAP20-2Q3LI61 65 aa2.92□□□□□ -1.94
USF1-204ENST00000472217 SPRR5A0A1B0GTR4 108 aa2.89□□□□□ -1.95
USF1-204ENST00000472217 KRTAP12-4P60329 112 aa2.86□□□□□ -1.95
USF1-204ENST00000472217 KRTAP5-7Q6L8G8 165 aa2.85□□□□□ -1.95
USF1-204ENST00000472217 LCE3CQ5T5A8 94 aa2.83□□□□□ -1.96
USF1-204ENST00000472217 CDC42SE1Q9NRR8 79 aa2.83□□□□□ -1.96
USF1-204ENST00000472217 SYNE1Q8NF91 8797 aaKnown RBP2.77□□□□□ -1.97
USF1-204ENST00000472217 NDUFAF8A1L188 74 aa2.76□□□□□ -1.97
USF1-204ENST00000472217 ROMO1P60602 79 aa2.76□□□□□ -1.97
USF1-204ENST00000472217 LCE1EQ5T753 118 aa2.76□□□□□ -1.97
USF1-204ENST00000472217 MT1AP04731 61 aa2.73□□□□□ -1.97
USF1-204ENST00000472217 PRAC1Q96KF2 57 aa2.73□□□□□ -1.97
USF1-204ENST00000472217 KRTAP6-1Q3LI64 71 aa2.72□□□□□ -1.97
USF1-204ENST00000472217 KRTAP5-2Q701N4 177 aa2.7□□□□□ -1.98
USF1-204ENST00000472217 KRTAP9-6A8MVA2 160 aa2.69□□□□□ -1.98
USF1-204ENST00000472217 LUZP6Q538Z0 58 aa2.69□□□□□ -1.98
USF1-204ENST00000472217 KRTAP5-11Q6L8G4 156 aa2.62□□□□□ -1.99
USF1-204ENST00000472217 KRTAP6-2Q3LI66 62 aa2.61□□□□□ -1.99
USF1-204ENST00000472217 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
USF1-204ENST00000472217 AHNAKQ09666 5890 aaKnown RBP2.58□□□□□ -2
USF1-204ENST00000472217 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.56□□□□□ -2
USF1-204ENST00000472217 LCE1FQ5T754 118 aa2.49□□□□□ -2.01
USF1-204ENST00000472217 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
USF1-204ENST00000472217 OBSCNQ5VST9 7968 aa2.48□□□□□ -2.01
USF1-204ENST00000472217 MUC5BQ9HC84 5762 aaPredicted RBP2.45□□□□□ -2.02
USF1-204ENST00000472217 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
USF1-204ENST00000472217 LCE3EQ5T5B0 92 aa2.17□□□□□ -2.06
USF1-204ENST00000472217 LCE1BQ5T7P3 118 aa2.17□□□□□ -2.06
USF1-204ENST00000472217 INE1O15225 51 aa2.14□□□□□ -2.07
USF1-204ENST00000472217 LCE1CQ5T751 118 aa2.13□□□□□ -2.07
USF1-204ENST00000472217 KRTAP4-4Q9BYR3 166 aa2.11□□□□□ -2.07
USF1-204ENST00000472217 LCE3DQ9BYE3 92 aa2.02□□□□□ -2.09
USF1-204ENST00000472217 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
USF1-204ENST00000472217 PHGR1C9JFL3 82 aa1.73□□□□□ -2.13
USF1-204ENST00000472217 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
USF1-204ENST00000472217 PRM1P04553 51 aa1.4□□□□□ -2.19
USF1-204ENST00000472217 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
USF1-204ENST00000472217 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 33.7 ms