RNA–Protein interactions for RNA: ENST00000471658.5

PSPC1-203, Transcript of paraspeckle component 1, humanhuman

TSL 1 (best)

Gene PSPC1, Length 1,647 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-203ENST00000471658 SPRR2EP22531 72 aa6.93□□□□□ -1.3
PSPC1-203ENST00000471658 SPRR2BP35325 72 aa6.93□□□□□ -1.3
PSPC1-203ENST00000471658 SPRR2AP35326 72 aa6.93□□□□□ -1.3
PSPC1-203ENST00000471658 NEBP20929 6669 aa6.9□□□□□ -1.3
PSPC1-203ENST00000471658 KTN1-AS1Q86SY8 53 aa6.89□□□□□ -1.31
PSPC1-203ENST00000471658 MT1LQ93083 61 aa6.87□□□□□ -1.31
PSPC1-203ENST00000471658 KRTAP19-3Q7Z4W3 81 aa6.84□□□□□ -1.31
PSPC1-203ENST00000471658 KRTAP15-1Q3LI76 137 aa6.78□□□□□ -1.32
PSPC1-203ENST00000471658 LCE5AQ5TCM9 118 aa6.77□□□□□ -1.33
PSPC1-203ENST00000471658 MT1GP13640 62 aa6.74□□□□□ -1.33
PSPC1-203ENST00000471658 SPRR2DP22532 72 aa6.68□□□□□ -1.34
PSPC1-203ENST00000471658 MT1MQ8N339 61 aa6.68□□□□□ -1.34
PSPC1-203ENST00000471658 KRTAP4-7Q9BYR0 210 aa6.65□□□□□ -1.34
PSPC1-203ENST00000471658 KRTAP4-3Q9BYR4 195 aa6.59□□□□□ -1.35
PSPC1-203ENST00000471658 LCE3CQ5T5A8 94 aa6.54□□□□□ -1.36
PSPC1-203ENST00000471658 KRTAP19-4Q3LI73 84 aa6.51□□□□□ -1.37
PSPC1-203ENST00000471658 DSTQ03001 7570 aaKnown RBP6.5□□□□□ -1.37
PSPC1-203ENST00000471658 LCE3BQ5TA77 95 aa6.45□□□□□ -1.38
PSPC1-203ENST00000471658 KRTAP2-3P0C7H8 128 aa6.43□□□□□ -1.38
PSPC1-203ENST00000471658 KRTAP20-1Q3LI63 56 aa6.43□□□□□ -1.38
PSPC1-203ENST00000471658 KRTAP2-4Q9BYR9 128 aa6.43□□□□□ -1.38
PSPC1-203ENST00000471658 KRTAP2-2Q9BYT5 123 aa6.28□□□□□ -1.4
PSPC1-203ENST00000471658 KRTAP2-1Q9BYU5 128 aa6.28□□□□□ -1.4
PSPC1-203ENST00000471658 LOC100996750A0A140TA64 210 aa6.26□□□□□ -1.41
PSPC1-203ENST00000471658 KRTAP9-6A8MVA2 160 aa6.22□□□□□ -1.41
PSPC1-203ENST00000471658 SPRR5A0A1B0GTR4 108 aa6.11□□□□□ -1.43
PSPC1-203ENST00000471658 KRTAP5-5Q701N2 237 aaPredicted RBP6.04□□□□□ -1.44
PSPC1-203ENST00000471658 KRTAP5-4Q6L8H1 288 aa5.95□□□□□ -1.46
PSPC1-203ENST00000471658 LCE4AQ5TA78 99 aa5.9□□□□□ -1.46
PSPC1-203ENST00000471658 KRTAP4-9Q9BYQ8 210 aa5.9□□□□□ -1.46
PSPC1-203ENST00000471658 MT4P47944 62 aa5.84□□□□□ -1.47
PSPC1-203ENST00000471658 MT1AP04731 61 aa5.81□□□□□ -1.48
PSPC1-203ENST00000471658 KRTAP6-1Q3LI64 71 aa5.81□□□□□ -1.48
PSPC1-203ENST00000471658 H3BS24 57 aa5.79□□□□□ -1.48
PSPC1-203ENST00000471658 LCE1DQ5T752 114 aa5.79□□□□□ -1.48
PSPC1-203ENST00000471658 SYNE1Q8NF91 8797 aaKnown RBP5.76□□□□□ -1.49
PSPC1-203ENST00000471658 KRTAP4-6Q9BYQ5 205 aa5.76□□□□□ -1.49
PSPC1-203ENST00000471658 HMCN1Q96RW7 5635 aa5.72□□□□□ -1.49
PSPC1-203ENST00000471658 KRTAP12-4P60329 112 aa5.68□□□□□ -1.5
PSPC1-203ENST00000471658 LUZP6Q538Z0 58 aa5.66□□□□□ -1.5
PSPC1-203ENST00000471658 KRTAP20-2Q3LI61 65 aa5.59□□□□□ -1.52
PSPC1-203ENST00000471658 KRTAP9-4Q9BYQ2 154 aa5.57□□□□□ -1.52
PSPC1-203ENST00000471658 KRTAP6-2Q3LI66 62 aa5.41□□□□□ -1.54
PSPC1-203ENST00000471658 KRTAP5-3Q6L8H2 238 aa5.41□□□□□ -1.54
PSPC1-203ENST00000471658 KRTAP5-2Q701N4 177 aa5.33□□□□□ -1.56
PSPC1-203ENST00000471658 NDUFAF8A1L188 74 aa5.31□□□□□ -1.56
PSPC1-203ENST00000471658 MT3P25713 68 aa5.28□□□□□ -1.56
PSPC1-203ENST00000471658 AHNAK2Q8IVF2 5795 aa5.26□□□□□ -1.57
PSPC1-203ENST00000471658 GPR98Q8WXG9 6306 aa5.06□□□□□ -1.6
PSPC1-203ENST00000471658 OBSCNQ5VST9 7968 aa5.02□□□□□ -1.61
PSPC1-203ENST00000471658 KRTAP5-10Q6L8G5 202 aa5.01□□□□□ -1.61
PSPC1-203ENST00000471658 KRTAP4-11Q9BYQ6 195 aa4.94□□□□□ -1.62
PSPC1-203ENST00000471658 LCE3DQ9BYE3 92 aa4.84□□□□□ -1.63
PSPC1-203ENST00000471658 A0A0A0MQY5 61 aa4.8□□□□□ -1.64
PSPC1-203ENST00000471658 KRTAP5-8O75690 187 aa4.76□□□□□ -1.65
PSPC1-203ENST00000471658 KRTAP5-7Q6L8G8 165 aa4.7□□□□□ -1.66
PSPC1-203ENST00000471658 KRTAP5-1Q6L8H4 278 aa4.68□□□□□ -1.66
PSPC1-203ENST00000471658 LCE3EQ5T5B0 92 aa4.66□□□□□ -1.66
PSPC1-203ENST00000471658 LCE1EQ5T753 118 aa4.66□□□□□ -1.66
PSPC1-203ENST00000471658 KRTAP4-12Q9BQ66 201 aa4.62□□□□□ -1.67
PSPC1-203ENST00000471658 MUC5ACP98088 5654 aa4.57□□□□□ -1.68
PSPC1-203ENST00000471658 KRTAP9-9Q9BYP9 154 aa4.46□□□□□ -1.69
PSPC1-203ENST00000471658 LCE1BQ5T7P3 118 aa4.43□□□□□ -1.7
PSPC1-203ENST00000471658 KRTAP4-2Q9BYR5 136 aa4.4□□□□□ -1.7
PSPC1-203ENST00000471658 INE1O15225 51 aa4.38□□□□□ -1.71
PSPC1-203ENST00000471658 LCE1CQ5T751 118 aa4.34□□□□□ -1.71
PSPC1-203ENST00000471658 MUC5BQ9HC84 5762 aaPredicted RBP4.24□□□□□ -1.73
PSPC1-203ENST00000471658 AHNAKQ09666 5890 aaKnown RBP4.11□□□□□ -1.75
PSPC1-203ENST00000471658 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.02□□□□□ -1.77
PSPC1-203ENST00000471658 PRM1P04553 51 aa3.91□□□□□ -1.78
PSPC1-203ENST00000471658 KRTAP5-11Q6L8G4 156 aa3.86□□□□□ -1.79
PSPC1-203ENST00000471658 KRTAP21-2Q3LI59 83 aa3.8□□□□□ -1.8
PSPC1-203ENST00000471658 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
PSPC1-203ENST00000471658 KRTAP4-4Q9BYR3 166 aa3.45□□□□□ -1.86
PSPC1-203ENST00000471658 PHGR1C9JFL3 82 aa3.33□□□□□ -1.88
PSPC1-203ENST00000471658 MUC19Q7Z5P9 8384 aa3.02□□□□□ -1.93
PSPC1-203ENST00000471658 KRTAP21-1Q3LI58 79 aa2.3□□□□□ -2.04
PSPC1-203ENST00000471658 MUC16Q8WXI7 14507 aa2.16□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 79.4 ms